2QBY: Base Pair Morphology Step Parameters

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NDB ID: PD1022 PDB ID: 2QBY

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	CC_DA1DG2:DC30DT31_DD	0.457	-0.817	3.539	-0.66	6.259	35.621	-2.252	-0.835	3.343	10.133	1.069	36.155
1	3	CC_DA3DT4:DA28DT29_DD	0.095	-1.246	3.236	-4.688	3.114	32.549	-2.705	-0.938	3.063	5.504	8.287	33.019
1	9	CC_DA9DG10:DC22DT23_DD	0.568	-0.526	3.493	-5.843	-4.272	31.459	-0.139	-2.126	3.376	-7.75	10.601	32.26
1	11	CC_DA11DT12:DA20DT21_DD	-0.227	-1.065	3.411	-2.138	-3.772	31.388	-1.21	-0.004	3.519	-6.931	3.928	31.679
1	14	CC_DA14DA15:DT17DT18_DD	-0.353	-0.45	3.405	5.9	2.663	32.3	-1.26	1.656	3.245	4.727	-10.474	32.925
1	15	CC_DA15DA16:DT16DT17_DD	0.848	0.541	3.165	-0.653	-0.009	36.546	0.864	-1.439	3.149	-0.014	1.042	36.552
1	16	CC_DA16DC17:DG15DT16_DD	-0.653	-0.666	3.278	4.11	1.788	28.289	-1.743	2.233	3.106	3.629	-8.343	28.635
1	20	CC_DA20DG21:DC11DT12_DD	1.239	0.365	3.379	4.022	4.598	30.91	-0.242	-1.484	3.524	8.522	-7.454	31.494
1	23	CC_DA23DA24:DT8DT9_DD	0.055	-0.415	3.127	2.994	-6.988	38.958	0.179	0.257	3.147	-10.357	-4.438	39.664
1	24	CC_DA24DA25:DT7DT8_DD	0.341	-0.714	3.237	0.359	-5.436	36.479	-0.389	-0.491	3.309	-8.625	-0.57	36.87
1	25	CC_DA25DT26:DA6DT7_DD	-0.549	-1.217	3.395	0.124	-2.59	31.301	-1.736	1.038	3.48	-4.791	-0.229	31.405
1	29	CC_DA29DC30:DG2DT3_DD	0.616	-1.221	3.113	-9.618	1.343	24.329	-3.028	-3.732	2.613	3.037	21.745	26.168
1	8	CC_DC8DA9:DT23DG24_DD	-0.025	1.173	2.995	9.042	13.196	27.296	-0.294	1.724	3.073	25.386	-17.395	31.561
1	17	CC_DC17DG18:DC14DG15_DD	0.393	2.237	3.774	-2.968	28.048	22.006	-2.473	-1.29	4.061	52.482	5.554	35.636
1	30	CC_DC30DA31:DT1DG2_DD	-0.887	-1.764	3.173	-3.077	8.554	34.728	-3.992	1.035	2.742	14.036	5.048	35.863
1	2	CC_DG2DA3:DT29DC30_DD	0.514	-0.645	3.647	7.833	-5.592	38.912	-0.209	0.276	3.732	-8.241	-11.545	40.04
1	10	CC_DG10DA11:DT21DC22_DD	-0.881	-1.189	3.726	-4.587	0.498	35.597	-2.013	0.672	3.79	0.81	7.465	35.885
1	13	CC_DG13DA14:DT18DC19_DD	0.336	-0.59	3.015	0.181	-0.367	35.936	-0.907	-0.521	3.023	-0.595	-0.294	35.938
1	18	CC_DG18DT19:DA13DC14_DD	-0.734	0.704	3.606	-2.159	-10.479	36.529	2.524	0.83	3.323	-16.293	3.357	38.013
1	21	CC_DG21DG22:DC10DC11_DD	-1.415	0.389	3.139	-5.584	5.659	31.97	-0.285	1.538	3.35	10.08	9.947	32.919
1	22	CC_DG22DA23:DT9DC10_DD	-0.292	-0.561	2.935	-6.634	-3.1	35.627	-0.505	-0.377	2.977	-5.002	10.704	36.348
1	4	CC_DT4DT5:DA27DA28_DD	1.201	-0.133	2.924	8.349	-5.25	35.832	0.449	-0.838	3.105	-8.34	-13.263	37.122
1	5	CC_DT5DT6:DA26DA27_DD	0.115	-0.1	3.305	1.17	8.813	29.087	-1.973	0.017	3.143	17.052	-2.263	30.387
1	6	CC_DT6DT7:DA25DA26_DD	0.472	0.828	3.455	1.375	-0.594	41.469	1.235	-0.511	3.456	-0.838	-1.942	41.495
1	7	CC_DT7DC8:DG24DA25_DD	-0.346	1.07	3.83	-8.178	0.664	34.938	1.625	-0.829	3.83	1.088	13.393	35.86
1	12	CC_DT12DG13:DC19DA20_DD	0.091	-1.361	2.774	-4.653	-1.792	30.592	-2.251	-0.94	2.803	-3.369	8.745	30.986
1	19	CC_DT19DA20:DT12DA13_DD	-0.017	2.049	3.322	-1.323	-18.643	51.158	3.297	-0.056	2.49	-20.812	1.477	54.248
1	26	CC_DT26DT27:DA5DA6_DD	0.61	-1.06	3.421	-1.575	-3.85	34.43	-1.153	-1.279	3.485	-6.475	2.649	34.673
1	27	CC_DT27DT28:DA4DA5_DD	-0.113	-0.785	3.378	-1.038	-0.586	39.886	-1.081	0.042	3.39	-0.858	1.521	39.903
1	28	CC_DT28DA29:DT3DA4_DD	0.42	-0.292	3.063	7.701	6.116	29.173	-1.683	0.633	2.955	11.73	-14.769	30.752

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.