2QUS: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: UR0121 PDB ID: 2QUS

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_A4:U61_A	0.129	-0.043	0.173	-2.402	-6.171	0.916
1	25	A_A13:U31_A	-0.063	-0.104	0.427	5.689	-13.238	7.167
1	20	A_A18:U26_A	-0.038	-0.204	-0.051	-18.512	-11.053	-1.198
1	13	A_A38:A51_A	-6.614	-1.334	1.315	-5.98	10.201	22.063
1	6	A_C6:G59_A	0.0	-0.281	0.053	9.58	-12.195	-3.125
1	7	A_C7:G58_A	0.318	-0.078	-0.25	8.189	-6.908	1.168
1	8	A_C8:G57_A	-0.38	-0.203	-0.046	-8.329	-10.186	0.744
1	12	A_C12:A53_A	5.092	-1.217	1.646	12.61	11.115	4.384
1	24	A_C14:G30_A	0.428	-0.337	-0.021	8.606	-13.135	-0.883
1	23	A_C15:G29_A	0.23	-0.325	-0.021	5.186	-7.867	-2.032
1	26	A_C32:G37_A	0.596	-0.303	-0.011	6.181	5.596	-1.039
1	16	A_C41:G48_A	0.363	-0.099	-0.405	14.147	-7.103	-1.193
1	17	A_C42:G47_A	0.645	-0.18	-0.477	1.576	-6.697	6.654
1	2	A_G2:C63_A	0.129	-0.219	-0.076	-5.8	-6.138	1.422
1	3	A_G3:C62_A	-0.395	-0.41	-0.247	-7.083	-8.853	-5.24
1	5	A_G5:C60_A	-0.376	-0.235	0.439	9.366	-10.253	-0.898
1	10	A_G10:C55_A	-0.938	-0.065	0.079	-6.215	-13.638	9.035
1	22	A_G16:C28_A	-0.291	-0.245	0.134	-0.509	-13.63	0.308
1	21	A_G17:C27_A	-0.206	-0.335	-0.406	-15.175	-19.508	-2.079
1	18	A_G20:U21_A	7.943	2.049	0.069	0.404	4.128	18.63
1	14	A_G39:C50_A	-0.717	0.02	0.256	7.135	-2.37	6.826
1	1	A_GTP1:C64_A	0.059	-0.023	-0.095	-10.535	-9.871	0.646
1	9	A_U9:A56_A	0.213	-0.561	0.12	-7.438	-5.892	2.003
1	11	A_U11:A54_A	0.174	-0.209	0.617	-6.561	0.157	-1.083
1	19	A_U24:A46_A	-0.601	0.012	0.454	-17.585	3.202	7.457
1	15	A_U40:A49_A	0.207	-0.203	-0.142	12.942	-10.111	1.799
1	30	B_A4:U61_B	-0.302	-0.268	-0.109	-2.988	-12.222	5.403
1	51	B_A13:U31_B	-0.224	-0.388	0.053	2.826	-15.404	2.118
1	46	B_A18:U26_B	-1.057	-0.408	-0.253	-12.653	-9.141	-7.831
1	40	B_A38:A51_B	-6.387	-1.219	0.372	-1.076	-10.521	42.284
1	32	B_C6:G59_B	-0.206	-0.235	-0.398	4.708	-5.871	-1.001
1	33	B_C7:G58_B	-0.023	-0.167	-0.497	16.581	-8.776	0.712
1	34	B_C8:G57_B	-0.05	-0.383	-0.73	8.753	-11.454	-2.577
1	39	B_C12:A52_B	5.803	-2.858	-0.977	20.042	5.668	-45.334
1	50	B_C14:G30_B	0.215	-0.04	0.199	11.57	-17.968	3.047
1	49	B_C15:G29_B	-0.19	-0.335	-0.39	9.498	-15.54	-2.677
1	52	B_C32:G37_B	0.526	-0.338	0.02	8.083	1.243	-1.987
1	43	B_C41:G48_B	0.878	0.237	-0.31	0.216	-4.02	10.886
1	44	B_C42:G47_B	0.519	-0.264	-0.212	-3.59	-2.248	-4.622
1	28	B_G2:C63_B	-0.217	-0.219	-0.302	-8.561	-3.667	-1.965
1	29	B_G3:C62_B	-0.372	-0.185	0.083	-4.021	-7.351	-0.586
1	31	B_G5:C60_B	0.009	-0.242	-0.099	-8.581	-8.265	-0.248
1	36	B_G10:C55_B	-0.133	-0.055	-0.127	-12.346	-13.93	6.366
1	48	B_G16:C28_B	-0.494	-0.107	0.023	-2.833	-6.324	3.593
1	47	B_G17:C27_B	-0.229	-0.246	0.278	0.622	-11.131	1.344
1	38	B_G34:A53_B	3.675	3.905	0.511	-45.578	-43.887	84.46
1	41	B_G39:C50_B	-0.786	-0.116	-0.524	3.785	-9.452	9.54
1	27	B_GTP1:C64_B	-0.833	-0.399	-0.045	-7.955	-12.009	2.485
1	35	B_U9:A56_B	-0.281	-0.109	-0.432	-1.801	-15.112	6.131
1	37	B_U11:A54_B	-0.029	-0.045	0.277	2.912	-5.072	2.704
1	45	B_U24:A46_B	-0.462	-0.168	0.332	-16.531	0.481	6.755
1	42	B_U40:A49_B	0.166	-0.005	-0.371	2.143	1.227	4.728

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.