A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: UR0121  PDB ID: 2QUS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A4:U61_A0.129-0.0430.173-2.402-6.1710.916
125A_A13:U31_A-0.063-0.1040.4275.689-13.2387.167
120A_A18:U26_A-0.038-0.204-0.051-18.512-11.053-1.198
113A_A38:A51_A-6.614-1.3341.315-5.9810.20122.063
16A_C6:G59_A0.0-0.2810.0539.58-12.195-3.125
17A_C7:G58_A0.318-0.078-0.258.189-6.9081.168
18A_C8:G57_A-0.38-0.203-0.046-8.329-10.1860.744
112A_C12:A53_A5.092-1.2171.64612.6111.1154.384
124A_C14:G30_A0.428-0.337-0.0218.606-13.135-0.883
123A_C15:G29_A0.23-0.325-0.0215.186-7.867-2.032
126A_C32:G37_A0.596-0.303-0.0116.1815.596-1.039
116A_C41:G48_A0.363-0.099-0.40514.147-7.103-1.193
117A_C42:G47_A0.645-0.18-0.4771.576-6.6976.654
12A_G2:C63_A0.129-0.219-0.076-5.8-6.1381.422
13A_G3:C62_A-0.395-0.41-0.247-7.083-8.853-5.24
15A_G5:C60_A-0.376-0.2350.4399.366-10.253-0.898
110A_G10:C55_A-0.938-0.0650.079-6.215-13.6389.035
122A_G16:C28_A-0.291-0.2450.134-0.509-13.630.308
121A_G17:C27_A-0.206-0.335-0.406-15.175-19.508-2.079
118A_G20:U21_A7.9432.0490.0690.4044.12818.63
114A_G39:C50_A-0.7170.020.2567.135-2.376.826
11A_GTP1:C64_A0.059-0.023-0.095-10.535-9.8710.646
19A_U9:A56_A0.213-0.5610.12-7.438-5.8922.003
111A_U11:A54_A0.174-0.2090.617-6.5610.157-1.083
119A_U24:A46_A-0.6010.0120.454-17.5853.2027.457
115A_U40:A49_A0.207-0.203-0.14212.942-10.1111.799
130B_A4:U61_B-0.302-0.268-0.109-2.988-12.2225.403
151B_A13:U31_B-0.224-0.3880.0532.826-15.4042.118
146B_A18:U26_B-1.057-0.408-0.253-12.653-9.141-7.831
140B_A38:A51_B-6.387-1.2190.372-1.076-10.52142.284
132B_C6:G59_B-0.206-0.235-0.3984.708-5.871-1.001
133B_C7:G58_B-0.023-0.167-0.49716.581-8.7760.712
134B_C8:G57_B-0.05-0.383-0.738.753-11.454-2.577
139B_C12:A52_B5.803-2.858-0.97720.0425.668-45.334
150B_C14:G30_B0.215-0.040.19911.57-17.9683.047
149B_C15:G29_B-0.19-0.335-0.399.498-15.54-2.677
152B_C32:G37_B0.526-0.3380.028.0831.243-1.987
143B_C41:G48_B0.8780.237-0.310.216-4.0210.886
144B_C42:G47_B0.519-0.264-0.212-3.59-2.248-4.622
128B_G2:C63_B-0.217-0.219-0.302-8.561-3.667-1.965
129B_G3:C62_B-0.372-0.1850.083-4.021-7.351-0.586
131B_G5:C60_B0.009-0.242-0.099-8.581-8.265-0.248
136B_G10:C55_B-0.133-0.055-0.127-12.346-13.936.366
148B_G16:C28_B-0.494-0.1070.023-2.833-6.3243.593
147B_G17:C27_B-0.229-0.2460.2780.622-11.1311.344
138B_G34:A53_B3.6753.9050.511-45.578-43.88784.46
141B_G39:C50_B-0.786-0.116-0.5243.785-9.4529.54
127B_GTP1:C64_B-0.833-0.399-0.045-7.955-12.0092.485
135B_U9:A56_B-0.281-0.109-0.432-1.801-15.1126.131
137B_U11:A54_B-0.029-0.0450.2772.912-5.0722.704
145B_U24:A46_B-0.462-0.1680.332-16.5310.4816.755
142B_U40:A49_B0.166-0.005-0.3712.1431.2274.728

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.