2QUS: Base Pair Morphology Step Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: UR0121 PDB ID: 2QUS

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_A4G5:C60U61_AA	-0.58	-1.652	2.748	-4.642	4.838	31.354	-3.704	0.368	2.529	8.826	8.468	32.046
1	23	AA_A13C32:G37U31_AA	-1.674	3.159	-1.189	-159.924	25.031	-153.024	-1.555	-0.674	-1.65	-12.553	-80.205	-175.788
1	18	AA_A18G17:C27U26_AA	-0.18	1.816	-3.303	-0.15	-4.379	-31.089	-4.156	-0.305	-3.026	8.119	-0.278	-31.389
1	13	AA_A38G39:C50A51_AA	-1.023	0.131	3.078	1.11	11.616	47.704	-0.67	1.312	3.007	14.118	-1.348	49.03
1	6	AA_C6C7:G58G59_AA	0.192	-1.669	3.268	2.096	7.168	33.708	-3.87	-0.015	2.869	12.177	-3.56	34.502
1	7	AA_C7C8:G57G58_AA	-0.208	-2.213	3.455	-0.283	16.345	28.529	-6.409	0.325	1.937	30.235	0.524	32.797
1	8	AA_C8U9:A56G57_AA	0.281	-1.245	3.223	-2.286	7.354	32.721	-3.289	-0.84	2.858	12.834	3.99	33.591
1	12	AA_C12A38:A51A53_AA	0.87	0.279	5.569	-2.872	1.642	51.701	0.132	-1.324	5.522	1.88	3.289	51.8
1	22	AA_C14A13:U31G30_AA	0.454	0.982	-3.237	-2.414	-8.76	-31.578	-3.16	1.196	-2.83	15.694	-4.325	-32.827
1	21	AA_C15C14:G30G29_AA	0.179	1.441	-3.282	0.747	-9.72	-33.114	-3.857	0.192	-2.764	16.612	1.277	-34.48
1	16	AA_C41C42:G47G48_AA	0.491	-2.253	3.587	3.415	7.795	30.138	-5.682	-0.252	2.963	14.629	-6.408	31.29
1	2	AA_G2G3:C62C63_AA	0.617	-2.197	3.311	2.692	7.021	22.784	-7.389	-0.681	2.582	17.182	-6.587	23.977
1	3	AA_G3A4:U61C62_AA	-0.632	-2.077	3.115	-5.484	1.367	30.455	-4.143	0.171	3.085	2.575	10.329	30.962
1	5	AA_G5C6:G59C60_AA	-0.075	-1.521	3.21	1.363	4.378	32.05	-3.462	0.362	2.976	7.879	-2.453	32.368
1	10	AA_G10U11:A54C55_AA	-0.557	-1.115	3.467	-4.367	10.488	34.44	-3.302	0.268	3.055	17.144	7.138	36.212
1	20	AA_G16C15:G29C28_AA	-0.196	1.815	-3.296	-0.488	-12.012	-27.228	-5.798	-0.291	-2.309	24.081	-0.977	-29.718
1	19	AA_G17G16:C28C27_AA	-0.144	2.012	-3.657	-1.659	-12.467	-33.196	-5.162	0.01	-2.751	20.911	-2.783	-35.436
1	14	AA_G39U40:A49C50_AA	-0.753	-1.816	3.152	0.959	10.577	31.197	-4.781	1.473	2.401	18.991	-1.722	32.913
1	1	AA_GTP1G2:C63C64_AA	-0.262	-1.706	3.149	0.039	5.34	32.468	-3.854	0.469	2.84	9.47	-0.069	32.893
1	9	AA_U9G10:C55A56_AA	0.463	-1.204	3.132	2.906	10.343	26.496	-4.557	-0.343	2.528	21.478	-6.035	28.555
1	11	AA_U11C12:A53A54_AA	0.334	-0.388	2.956	1.095	19.419	45.274	-1.769	-0.329	2.601	23.964	-1.351	49.073
1	17	AA_U24A18:U26A46_AA	4.12	0.694	-3.614	-5.003	9.277	-135.451	-0.311	2.259	-3.561	-5.01	-2.702	-135.649
1	15	AA_U40C41:G48A49_AA	0.249	-1.706	3.197	0.76	5.894	30.551	-4.229	-0.329	2.831	11.055	-1.426	31.11
1	27	BB_A4G5:C60U61_BB	-0.872	-1.647	3.274	-3.369	11.398	34.376	-4.136	0.958	2.682	18.61	5.5	36.314
1	47	BB_A13C32:G37U31_BB	-1.402	3.225	-1.373	-159.331	25.244	-168.932	-1.602	-0.633	-1.547	-12.628	-79.708	-178.206
1	42	BB_A18G17:C27U26_BB	0.398	2.298	-3.494	-2.623	-5.684	-27.178	-6.116	1.448	-2.912	11.895	-5.49	-27.876
1	37	BB_A38G39:C50A51_BB	-2.035	-0.101	3.204	2.18	7.113	48.059	-0.651	2.634	3.07	8.673	-2.658	48.597
1	29	BB_C6C7:G58G59_BB	1.353	-1.872	2.902	2.212	10.425	27.436	-5.484	-2.286	2.161	21.003	-4.456	29.396
1	30	BB_C7C8:G57G58_BB	-0.204	-1.828	3.289	1.865	17.473	30.598	-5.278	0.579	1.975	30.188	-3.223	35.18
1	31	BB_C8U9:A56G57_BB	0.006	-1.642	3.626	-2.202	9.211	29.884	-4.845	-0.441	2.992	17.322	4.14	31.316
1	36	BB_C12A38:A51A52_BB	1.77	-0.569	3.84	-6.911	6.863	29.903	-2.463	-4.691	3.157	12.878	12.967	31.414
1	46	BB_C14A13:U31G30_BB	-0.011	1.059	-3.075	1.993	-2.64	-35.215	-2.105	-0.29	-2.985	4.352	3.285	-35.365
1	45	BB_C15C14:G30G29_BB	0.634	1.549	-3.28	-3.08	-9.167	-28.381	-4.742	1.813	-2.584	18.046	-6.063	-29.951
1	40	BB_C41C42:G47G48_BB	-0.367	-2.03	3.231	1.147	8.878	28.51	-5.591	0.925	2.483	17.491	-2.26	29.854
1	25	BB_G2G3:C62C63_BB	0.958	-2.288	3.142	-0.269	6.615	25.328	-6.619	-2.179	2.465	14.768	0.6	26.165
1	26	BB_G3A4:U61C62_BB	0.001	-1.774	3.226	1.187	4.372	31.387	-4.011	0.206	2.956	8.028	-2.18	31.704
1	28	BB_G5C6:G59C60_BB	-0.273	-1.311	3.004	2.861	6.992	27.224	-4.096	1.135	2.553	14.503	-5.935	28.234
1	33	BB_G10U11:A54C55_BB	-0.145	-1.028	2.874	-3.359	9.333	29.889	-3.356	-0.257	2.452	17.499	6.299	31.456
1	44	BB_G16C15:G29C28_BB	-0.431	1.591	-3.437	3.428	-16.179	-29.829	-5.119	-1.245	-2.242	28.812	6.106	-34.016
1	43	BB_G17G16:C28C27_BB	-0.518	1.988	-3.088	1.251	-5.703	-33.023	-4.282	-1.082	-2.696	9.936	2.179	-33.521
1	35	BB_G34C12:A52A53_BB	-0.489	-4.086	1.61	24.551	31.94	-14.394	1.441	2.536	3.875	-56.404	43.356	-42.679
1	38	BB_G39U40:A49C50_BB	-0.868	-1.882	3.301	-4.244	6.188	30.934	-4.534	0.83	2.968	11.393	7.814	31.809
1	24	BB_GTP1G2:C63C64_BB	-0.259	-1.391	3.198	0.348	11.285	35.63	-3.54	0.446	2.648	17.897	-0.552	37.321
1	32	BB_U9G10:C55A56_BB	-0.087	-1.556	3.609	-3.503	12.715	30.978	-4.808	-0.433	2.768	22.567	6.218	33.605
1	34	BB_U11G34:A53A54_BB	-0.941	2.733	3.705	-1.993	-19.107	84.078	2.467	0.643	3.167	-14.107	1.471	85.845
1	41	BB_U24A18:U26A46_BB	3.981	1.176	-3.574	-1.66	6.613	-138.821	-0.586	2.136	-3.577	-3.532	-0.886	-138.898
1	39	BB_U40C41:G48A49_BB	0.864	-1.77	3.346	1.428	6.925	32.857	-4.168	-1.268	2.956	12.069	-2.488	33.589

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.