A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PD1036  PDB ID: 2R0Q 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_DA1:DT60_B0.064-0.2370.5585.301-18.358-2.961
12A_DA2:DT59_B-0.057-0.0870.123-0.338-9.3242.599
16A_DA6:DT55_B-0.13-0.2160.197-4.631-7.8119.951
19A_DA9:DT52_B0.355-0.083-0.1535.166-19.0296.317
112A_DA12:DT49_B-0.086-0.123-0.3210.064-9.031-5.689
119A_DA19:DT42_B-0.009-0.233-0.355-0.1843.6842.125
121A_DA21:DT40_B0.322-0.0710.3997.832-10.991-8.444
124A_DA24:DT37_B0.046-0.162-0.076-11.957-10.9895.995
125A_DA25:DT36_B-0.007-0.0020.105-5.635-3.2694.247
129A_DA29:DT32_B0.040.0960.035-11.369-15.079-3.752
13A_DC3:DG58_B0.088-0.0190.186-6.199-7.542-0.383
14A_DG4:DC57_B-0.253-0.146-0.369-8.752-7.664-0.607
18A_DG8:DC53_B0.030.025-0.0535.609-8.916-4.068
113A_DG13:DC48_B-0.2960.0480.37312.892-0.3710.041
114A_DG14:DC47_B-0.322-0.271-0.552.278-4.788-1.992
115A_DG15:DC46_B-0.306-0.09-0.55-19.1259.3142.525
117A_DG17:DC44_B0.07-0.0760.049-10.97-3.395-3.073
15A_DT5:DA56_B0.0320.027-0.1333.561-8.566-2.163
17A_DT7:DA54_B-0.062-0.072-0.1071.029-8.7811.806
110A_DT10:DA51_B-0.067-0.0180.043-1.773-21.4112.271
111A_DT11:DA50_B0.16-0.2450.042-8.808-18.8237.479
116A_DT16:DA45_B-0.043-0.2190.061-15.907-6.8681.127
118A_DT18:DA43_B-0.194-0.214-0.272-8.5363.1153.664
120A_DT20:DA41_B-0.051-0.113-0.3829.614-3.541-0.776
122A_DT22:DA39_B-0.047-0.140.66-3.798-2.481.698
123A_DT23:DA38_B-0.21-0.0290.0181.612-14.5395.552
126A_DT26:DA35_B0.025-0.1340.0823.393-11.1063.747
127A_DT27:DA34_B0.07-0.149-0.47510.209-16.331-0.111
128A_DT28:DA33_B0.03-0.065-0.0673.65-21.5573.85
130G_DA1:DT60_H0.061-0.2450.5865.317-17.927-2.953
131G_DA2:DT59_H-0.048-0.0770.1310.053-9.5992.625
135G_DA6:DT55_H-0.131-0.1970.196-5.042-7.07710.271
138G_DA9:DT52_H0.359-0.085-0.1315.299-19.1276.363
141G_DA12:DT49_H-0.054-0.11-0.3220.483-9.72-5.867
148G_DA19:DT42_H0.0-0.224-0.303-0.4673.1382.11
150G_DA21:DT40_H0.298-0.0780.3827.996-10.692-8.126
153G_DA24:DT37_H0.068-0.159-0.02-10.643-11.266.156
154G_DA25:DT36_H-0.031-0.0020.049-6.518-3.2634.313
158G_DA29:DT32_H0.0580.0980.053-11.536-14.865-3.939
132G_DC3:DG58_H0.105-0.0160.216-6.833-7.203-0.372
133G_DG4:DC57_H-0.256-0.13-0.363-7.942-7.078-0.67
137G_DG8:DC53_H0.0180.0-0.065.329-8.917-3.855
142G_DG13:DC48_H-0.330.0470.4212.8480.0260.338
143G_DG14:DC47_H-0.299-0.265-0.6161.473-5.944-1.771
144G_DG15:DC46_H-0.308-0.1-0.466-18.5518.6732.648
146G_DG17:DC44_H0.107-0.0930.011-10.839-3.888-3.174
134G_DT5:DA56_H0.0180.038-0.1293.798-8.344-2.113
136G_DT7:DA54_H-0.074-0.084-0.0710.889-8.1651.605
139G_DT10:DA51_H-0.075-0.0310.04-1.798-20.4012.322
140G_DT11:DA50_H0.156-0.2550.024-8.487-19.0537.584
145G_DT16:DA45_H-0.035-0.207-0.022-16.737-6.8181.216
147G_DT18:DA43_H-0.182-0.203-0.255-9.0752.7083.707
149G_DT20:DA41_H-0.071-0.116-0.3478.668-3.652-0.523
151G_DT22:DA39_H-0.027-0.1230.695-5.087-2.8431.651
152G_DT23:DA38_H-0.196-0.0310.0371.004-13.9395.198
155G_DT26:DA35_H0.052-0.1230.0784.573-11.0533.762
156G_DT27:DA34_H0.072-0.132-0.45110.166-16.06-0.081
157G_DT28:DA33_H0.008-0.064-0.0232.624-21.5933.761

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.