A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: PD1036  PDB ID: 2R0Q 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11AA_DA1DA2:DT59DT60_BB0.099-0.1063.3943.6430.25440.544-0.1820.2763.390.366-5.24540.701
12AA_DA2DC3:DG58DT59_BB-0.211-0.9793.484-3.141-3.18536.381-1.085-0.133.559-5.0785.00736.646
16AA_DA6DT7:DA54DT55_BB-0.967-0.6813.1942.6472.78228.926-1.9292.473.0185.539-5.26929.174
19AA_DA9DT10:DA51DT52_BB-0.424-0.0843.382-0.9110.5831.555-0.2660.6043.391.0661.67431.573
112AA_DA12DG13:DC48DT49_BB0.0070.3142.939-6.7156.71127.999-0.683-1.3132.85813.39113.429.534
119AA_DA19DT20:DA41DT42_BB-0.684-0.6233.2242.1075.34628.972-2.3161.7723.00710.554-4.15929.524
121AA_DA21DT22:DA39DT40_BB0.711-1.4973.541-0.0891.9130.838-3.206-1.3533.4433.5870.16730.896
124AA_DA24DA25:DT36DT37_BB-0.252-0.0263.129-2.1059.4133.143-1.4460.1113.01916.0773.59734.48
125AA_DA25DT26:DA35DT36_BB-0.637-0.7112.881-1.7733.35429.587-1.9920.9142.8186.5333.45329.823
13AA_DC3DG4:DC57DG58_BB0.3080.0213.4325.6184.43333.152-0.7180.4273.4117.658-9.70533.894
14AA_DG4DT5:DA56DC57_BB0.518-0.6643.049-0.584.48626.7-2.457-1.242.8889.6251.24527.074
18AA_DG8DA9:DT52DC53_BB0.185-0.2793.1773.0492.41641.111-0.6480.0563.1623.431-4.3341.287
113AA_DG13DG14:DC47DC48_BB0.426-1.3533.5761.1467.68932.866-3.64-0.5383.19913.358-1.99133.748
114AA_DG14DG15:DC46DC47_BB0.708-1.7123.977-1.9640.56537.056-2.781-1.4283.910.8883.08737.11
115AA_DG15DT16:DA45DC46_BB-1.122-0.9273.233-2.0231.22227.661-2.2251.8543.2612.554.22127.76
117AA_DG17DT18:DA43DC44_BB0.417-1.2963.2753.9741.07829.37-2.7610.0243.2532.113-7.78929.651
15AA_DT5DA6:DT55DA56_BB0.237-0.8313.423-2.82710.76129.771-3.501-0.9542.9220.0825.27531.738
17AA_DT7DG8:DC53DA54_BB-0.540.3763.256-1.8667.34136.412-0.40.5963.2911.5942.94637.165
110AA_DT10DT11:DA50DA51_BB0.8020.3573.5184.452-3.11241.9790.84-0.6173.547-4.322-6.18442.314
111AA_DT11DA12:DT49DA50_BB-0.1282.5913.2481.529-5.74641.7184.1630.3262.877-8.02-2.13442.121
116AA_DT16DG17:DC44DA45_BB-0.201-1.4463.154-0.7338.84227.68-4.630.2572.58217.9081.48529.041
118AA_DT18DA19:DT42DA43_BB0.143-0.8213.293.3144.27631.02-2.3040.353.1497.919-6.13731.476
120AA_DT20DA21:DT40DA41_BB-0.2380.1823.54-2.748-0.60737.9390.362-0.0143.545-0.9314.2238.039
122AA_DT22DT23:DA38DA39_BB0.051-0.4692.9018.8683.67231.677-1.3731.2342.7456.541-15.79933.063
123AA_DT23DA24:DT37DA38_BB0.452-0.483.584-3.2433.86942.729-1.069-0.9643.4885.2884.43343.012
126AA_DT26DT27:DA34DA35_BB-0.744-0.193.1721.631.30134.321-0.5171.5043.1252.202-2.7634.382
127AA_DT27DT28:DA33DA34_BB0.257-0.6953.466-1.6931.60334.205-1.445-0.7173.4152.7222.87434.282
128AA_DT28DA29:DT32DA33_BB-0.4990.0353.816-7.361-4.10139.9620.583-0.2413.823-5.9210.62740.805
129GG_DA1DA2:DT59DT60_HH0.099-0.1243.3793.8310.24540.517-0.2070.2963.3730.352-5.51640.691
130GG_DA2DC3:DG58DT59_HH-0.207-0.9893.515-3.266-3.3836.338-1.067-0.1593.593-5.3925.2136.631
134GG_DA6DT7:DA54DT55_HH-0.995-0.6993.1832.6032.66128.773-1.9522.5323.0075.326-5.2129.008
137GG_DA9DT10:DA51DT52_HH-0.445-0.0843.401-0.464-0.25831.469-0.1050.733.408-0.4760.85531.474
140GG_DA12DG13:DC48DT49_HH0.0420.2992.937-7.087.04727.82-0.776-1.4512.83114.09414.1629.525
147GG_DA19DT20:DA41DT42_HH-0.666-0.643.2622.4364.90428.744-2.3021.8333.0479.767-4.85129.25
149GG_DA21DT22:DA39DT40_HH0.683-1.53.585-0.1862.2331.123-3.246-1.3083.4674.150.34731.202
152GG_DA24DA25:DT36DT37_HH-0.274-0.0343.22-1.2619.73733.166-1.5420.2683.09516.612.15234.549
153GG_DA25DT26:DA35DT36_HH-0.627-0.6972.813-2.3643.17729.653-1.9130.7952.7656.1734.59329.911
131GG_DC3DG4:DC57DG58_HH0.3030.0113.3855.6034.47133.119-0.7320.4213.3637.731-9.68933.865
132GG_DG4DT5:DA56DC57_HH0.51-0.6663.075-0.2514.18626.658-2.414-1.1522.9339.0070.5426.979
136GG_DG8DA9:DT52DC53_HH0.17-0.2933.1532.2842.84941.162-0.71-0.0063.1324.042-3.24141.317
141GG_DG13DG14:DC47DC48_HH0.423-1.3263.6292.1197.43933.065-3.551-0.363.28212.853-3.66133.933
142GG_DG14DG15:DC46DC47_HH0.711-1.7073.912-2.9910.72936.977-2.798-1.593.8121.1474.70637.1
143GG_DG15DT16:DA45DC46_HH-1.129-0.9393.243-1.1061.50727.665-2.322.0913.233.1462.30927.727
145GG_DG17DT18:DA43DC44_HH0.403-1.2723.3033.4610.88129.28-2.689-0.0463.2891.735-6.81529.493
133GG_DT5DA6:DT55DA56_HH0.262-0.8193.439-3.10910.74929.907-3.461-1.0472.93519.975.77731.887
135GG_DT7DG8:DC53DA54_HH-0.5280.3813.257-1.3677.43836.482-0.4020.6443.28611.7262.15537.232
138GG_DT10DT11:DA50DA51_HH0.8110.353.5054.551-2.39141.9740.751-0.623.545-3.323-6.32542.274
139GG_DT11DA12:DT49DA50_HH-0.1382.6123.2491.365-6.23641.9894.2010.322.845-8.642-1.89242.449
144GG_DT16DG17:DC44DA45_HH-0.23-1.4283.152-0.8029.35227.697-4.6520.2992.5518.8621.61929.215
146GG_DT18DA19:DT42DA43_HH0.124-0.8323.2632.6734.15531.13-2.2930.2613.1287.682-4.94131.51
148GG_DT20DA21:DT40DA41_HH-0.2330.2033.503-2.5-0.42337.8710.3710.0163.508-0.6513.84737.953
150GG_DT22DT23:DA38DA39_HH0.056-0.4782.9018.5962.96931.6-1.2941.2032.7665.315-15.3932.851
151GG_DT23DA24:DT37DA38_HH0.483-0.4943.494-3.1953.82842.704-1.075-0.9943.3965.2364.3742.981
154GG_DT26DT27:DA34DA35_HH-0.739-0.2023.2131.6331.2534.218-0.5341.5033.1672.123-2.77234.278
155GG_DT27DT28:DA33DA34_HH0.251-0.7043.495-1.7971.48634.088-1.449-0.7293.4452.5313.0634.165
156GG_DT28DA29:DT32DA33_HH-0.5050.0023.775-7.328-4.15840.1950.532-0.2123.787-5.9710.52341.033

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.