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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD1036
PDB ID:
2R0Q
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
AA_DA1DA2:DT59DT60_BB
0.099
-0.106
3.394
3.643
0.254
40.544
-0.182
0.276
3.39
0.366
-5.245
40.701
1
2
AA_DA2DC3:DG58DT59_BB
-0.211
-0.979
3.484
-3.141
-3.185
36.381
-1.085
-0.13
3.559
-5.078
5.007
36.646
1
6
AA_DA6DT7:DA54DT55_BB
-0.967
-0.681
3.194
2.647
2.782
28.926
-1.929
2.47
3.018
5.539
-5.269
29.174
1
9
AA_DA9DT10:DA51DT52_BB
-0.424
-0.084
3.382
-0.911
0.58
31.555
-0.266
0.604
3.39
1.066
1.674
31.573
1
12
AA_DA12DG13:DC48DT49_BB
0.007
0.314
2.939
-6.715
6.711
27.999
-0.683
-1.313
2.858
13.391
13.4
29.534
1
19
AA_DA19DT20:DA41DT42_BB
-0.684
-0.623
3.224
2.107
5.346
28.972
-2.316
1.772
3.007
10.554
-4.159
29.524
1
21
AA_DA21DT22:DA39DT40_BB
0.711
-1.497
3.541
-0.089
1.91
30.838
-3.206
-1.353
3.443
3.587
0.167
30.896
1
24
AA_DA24DA25:DT36DT37_BB
-0.252
-0.026
3.129
-2.105
9.41
33.143
-1.446
0.111
3.019
16.077
3.597
34.48
1
25
AA_DA25DT26:DA35DT36_BB
-0.637
-0.711
2.881
-1.773
3.354
29.587
-1.992
0.914
2.818
6.533
3.453
29.823
1
3
AA_DC3DG4:DC57DG58_BB
0.308
0.021
3.432
5.618
4.433
33.152
-0.718
0.427
3.411
7.658
-9.705
33.894
1
4
AA_DG4DT5:DA56DC57_BB
0.518
-0.664
3.049
-0.58
4.486
26.7
-2.457
-1.24
2.888
9.625
1.245
27.074
1
8
AA_DG8DA9:DT52DC53_BB
0.185
-0.279
3.177
3.049
2.416
41.111
-0.648
0.056
3.162
3.431
-4.33
41.287
1
13
AA_DG13DG14:DC47DC48_BB
0.426
-1.353
3.576
1.146
7.689
32.866
-3.64
-0.538
3.199
13.358
-1.991
33.748
1
14
AA_DG14DG15:DC46DC47_BB
0.708
-1.712
3.977
-1.964
0.565
37.056
-2.781
-1.428
3.91
0.888
3.087
37.11
1
15
AA_DG15DT16:DA45DC46_BB
-1.122
-0.927
3.233
-2.023
1.222
27.661
-2.225
1.854
3.261
2.55
4.221
27.76
1
17
AA_DG17DT18:DA43DC44_BB
0.417
-1.296
3.275
3.974
1.078
29.37
-2.761
0.024
3.253
2.113
-7.789
29.651
1
5
AA_DT5DA6:DT55DA56_BB
0.237
-0.831
3.423
-2.827
10.761
29.771
-3.501
-0.954
2.92
20.082
5.275
31.738
1
7
AA_DT7DG8:DC53DA54_BB
-0.54
0.376
3.256
-1.866
7.341
36.412
-0.4
0.596
3.29
11.594
2.946
37.165
1
10
AA_DT10DT11:DA50DA51_BB
0.802
0.357
3.518
4.452
-3.112
41.979
0.84
-0.617
3.547
-4.322
-6.184
42.314
1
11
AA_DT11DA12:DT49DA50_BB
-0.128
2.591
3.248
1.529
-5.746
41.718
4.163
0.326
2.877
-8.02
-2.134
42.121
1
16
AA_DT16DG17:DC44DA45_BB
-0.201
-1.446
3.154
-0.733
8.842
27.68
-4.63
0.257
2.582
17.908
1.485
29.041
1
18
AA_DT18DA19:DT42DA43_BB
0.143
-0.821
3.29
3.314
4.276
31.02
-2.304
0.35
3.149
7.919
-6.137
31.476
1
20
AA_DT20DA21:DT40DA41_BB
-0.238
0.182
3.54
-2.748
-0.607
37.939
0.362
-0.014
3.545
-0.931
4.22
38.039
1
22
AA_DT22DT23:DA38DA39_BB
0.051
-0.469
2.901
8.868
3.672
31.677
-1.373
1.234
2.745
6.541
-15.799
33.063
1
23
AA_DT23DA24:DT37DA38_BB
0.452
-0.48
3.584
-3.243
3.869
42.729
-1.069
-0.964
3.488
5.288
4.433
43.012
1
26
AA_DT26DT27:DA34DA35_BB
-0.744
-0.19
3.172
1.63
1.301
34.321
-0.517
1.504
3.125
2.202
-2.76
34.382
1
27
AA_DT27DT28:DA33DA34_BB
0.257
-0.695
3.466
-1.693
1.603
34.205
-1.445
-0.717
3.415
2.722
2.874
34.282
1
28
AA_DT28DA29:DT32DA33_BB
-0.499
0.035
3.816
-7.361
-4.101
39.962
0.583
-0.241
3.823
-5.92
10.627
40.805
1
29
GG_DA1DA2:DT59DT60_HH
0.099
-0.124
3.379
3.831
0.245
40.517
-0.207
0.296
3.373
0.352
-5.516
40.691
1
30
GG_DA2DC3:DG58DT59_HH
-0.207
-0.989
3.515
-3.266
-3.38
36.338
-1.067
-0.159
3.593
-5.392
5.21
36.631
1
34
GG_DA6DT7:DA54DT55_HH
-0.995
-0.699
3.183
2.603
2.661
28.773
-1.952
2.532
3.007
5.326
-5.21
29.008
1
37
GG_DA9DT10:DA51DT52_HH
-0.445
-0.084
3.401
-0.464
-0.258
31.469
-0.105
0.73
3.408
-0.476
0.855
31.474
1
40
GG_DA12DG13:DC48DT49_HH
0.042
0.299
2.937
-7.08
7.047
27.82
-0.776
-1.451
2.831
14.094
14.16
29.525
1
47
GG_DA19DT20:DA41DT42_HH
-0.666
-0.64
3.262
2.436
4.904
28.744
-2.302
1.833
3.047
9.767
-4.851
29.25
1
49
GG_DA21DT22:DA39DT40_HH
0.683
-1.5
3.585
-0.186
2.23
31.123
-3.246
-1.308
3.467
4.15
0.347
31.202
1
52
GG_DA24DA25:DT36DT37_HH
-0.274
-0.034
3.22
-1.261
9.737
33.166
-1.542
0.268
3.095
16.61
2.152
34.549
1
53
GG_DA25DT26:DA35DT36_HH
-0.627
-0.697
2.813
-2.364
3.177
29.653
-1.913
0.795
2.765
6.173
4.593
29.911
1
31
GG_DC3DG4:DC57DG58_HH
0.303
0.011
3.385
5.603
4.471
33.119
-0.732
0.421
3.363
7.731
-9.689
33.865
1
32
GG_DG4DT5:DA56DC57_HH
0.51
-0.666
3.075
-0.251
4.186
26.658
-2.414
-1.152
2.933
9.007
0.54
26.979
1
36
GG_DG8DA9:DT52DC53_HH
0.17
-0.293
3.153
2.284
2.849
41.162
-0.71
-0.006
3.132
4.042
-3.241
41.317
1
41
GG_DG13DG14:DC47DC48_HH
0.423
-1.326
3.629
2.119
7.439
33.065
-3.551
-0.36
3.282
12.853
-3.661
33.933
1
42
GG_DG14DG15:DC46DC47_HH
0.711
-1.707
3.912
-2.991
0.729
36.977
-2.798
-1.59
3.812
1.147
4.706
37.1
1
43
GG_DG15DT16:DA45DC46_HH
-1.129
-0.939
3.243
-1.106
1.507
27.665
-2.32
2.091
3.23
3.146
2.309
27.727
1
45
GG_DG17DT18:DA43DC44_HH
0.403
-1.272
3.303
3.461
0.881
29.28
-2.689
-0.046
3.289
1.735
-6.815
29.493
1
33
GG_DT5DA6:DT55DA56_HH
0.262
-0.819
3.439
-3.109
10.749
29.907
-3.461
-1.047
2.935
19.97
5.777
31.887
1
35
GG_DT7DG8:DC53DA54_HH
-0.528
0.381
3.257
-1.367
7.438
36.482
-0.402
0.644
3.286
11.726
2.155
37.232
1
38
GG_DT10DT11:DA50DA51_HH
0.811
0.35
3.505
4.551
-2.391
41.974
0.751
-0.62
3.545
-3.323
-6.325
42.274
1
39
GG_DT11DA12:DT49DA50_HH
-0.138
2.612
3.249
1.365
-6.236
41.989
4.201
0.32
2.845
-8.642
-1.892
42.449
1
44
GG_DT16DG17:DC44DA45_HH
-0.23
-1.428
3.152
-0.802
9.352
27.697
-4.652
0.299
2.55
18.862
1.619
29.215
1
46
GG_DT18DA19:DT42DA43_HH
0.124
-0.832
3.263
2.673
4.155
31.13
-2.293
0.261
3.128
7.682
-4.941
31.51
1
48
GG_DT20DA21:DT40DA41_HH
-0.233
0.203
3.503
-2.5
-0.423
37.871
0.371
0.016
3.508
-0.651
3.847
37.953
1
50
GG_DT22DT23:DA38DA39_HH
0.056
-0.478
2.901
8.596
2.969
31.6
-1.294
1.203
2.766
5.315
-15.39
32.851
1
51
GG_DT23DA24:DT37DA38_HH
0.483
-0.494
3.494
-3.195
3.828
42.704
-1.075
-0.994
3.396
5.236
4.37
42.981
1
54
GG_DT26DT27:DA34DA35_HH
-0.739
-0.202
3.213
1.633
1.25
34.218
-0.534
1.503
3.167
2.123
-2.772
34.278
1
55
GG_DT27DT28:DA33DA34_HH
0.251
-0.704
3.495
-1.797
1.486
34.088
-1.449
-0.729
3.445
2.531
3.06
34.165
1
56
GG_DT28DA29:DT32DA33_HH
-0.505
0.002
3.775
-7.328
-4.158
40.195
0.532
-0.212
3.787
-5.97
10.523
41.033
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.