2R0Q: Base Pair Morphology Step Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: PD1036 PDB ID: 2R0Q

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	AA_DA1DA2:DT59DT60_BB	0.099	-0.106	3.394	3.643	0.254	40.544	-0.182	0.276	3.39	0.366	-5.245	40.701
1	2	AA_DA2DC3:DG58DT59_BB	-0.211	-0.979	3.484	-3.141	-3.185	36.381	-1.085	-0.13	3.559	-5.078	5.007	36.646
1	6	AA_DA6DT7:DA54DT55_BB	-0.967	-0.681	3.194	2.647	2.782	28.926	-1.929	2.47	3.018	5.539	-5.269	29.174
1	9	AA_DA9DT10:DA51DT52_BB	-0.424	-0.084	3.382	-0.911	0.58	31.555	-0.266	0.604	3.39	1.066	1.674	31.573
1	12	AA_DA12DG13:DC48DT49_BB	0.007	0.314	2.939	-6.715	6.711	27.999	-0.683	-1.313	2.858	13.391	13.4	29.534
1	19	AA_DA19DT20:DA41DT42_BB	-0.684	-0.623	3.224	2.107	5.346	28.972	-2.316	1.772	3.007	10.554	-4.159	29.524
1	21	AA_DA21DT22:DA39DT40_BB	0.711	-1.497	3.541	-0.089	1.91	30.838	-3.206	-1.353	3.443	3.587	0.167	30.896
1	24	AA_DA24DA25:DT36DT37_BB	-0.252	-0.026	3.129	-2.105	9.41	33.143	-1.446	0.111	3.019	16.077	3.597	34.48
1	25	AA_DA25DT26:DA35DT36_BB	-0.637	-0.711	2.881	-1.773	3.354	29.587	-1.992	0.914	2.818	6.533	3.453	29.823
1	3	AA_DC3DG4:DC57DG58_BB	0.308	0.021	3.432	5.618	4.433	33.152	-0.718	0.427	3.411	7.658	-9.705	33.894
1	4	AA_DG4DT5:DA56DC57_BB	0.518	-0.664	3.049	-0.58	4.486	26.7	-2.457	-1.24	2.888	9.625	1.245	27.074
1	8	AA_DG8DA9:DT52DC53_BB	0.185	-0.279	3.177	3.049	2.416	41.111	-0.648	0.056	3.162	3.431	-4.33	41.287
1	13	AA_DG13DG14:DC47DC48_BB	0.426	-1.353	3.576	1.146	7.689	32.866	-3.64	-0.538	3.199	13.358	-1.991	33.748
1	14	AA_DG14DG15:DC46DC47_BB	0.708	-1.712	3.977	-1.964	0.565	37.056	-2.781	-1.428	3.91	0.888	3.087	37.11
1	15	AA_DG15DT16:DA45DC46_BB	-1.122	-0.927	3.233	-2.023	1.222	27.661	-2.225	1.854	3.261	2.55	4.221	27.76
1	17	AA_DG17DT18:DA43DC44_BB	0.417	-1.296	3.275	3.974	1.078	29.37	-2.761	0.024	3.253	2.113	-7.789	29.651
1	5	AA_DT5DA6:DT55DA56_BB	0.237	-0.831	3.423	-2.827	10.761	29.771	-3.501	-0.954	2.92	20.082	5.275	31.738
1	7	AA_DT7DG8:DC53DA54_BB	-0.54	0.376	3.256	-1.866	7.341	36.412	-0.4	0.596	3.29	11.594	2.946	37.165
1	10	AA_DT10DT11:DA50DA51_BB	0.802	0.357	3.518	4.452	-3.112	41.979	0.84	-0.617	3.547	-4.322	-6.184	42.314
1	11	AA_DT11DA12:DT49DA50_BB	-0.128	2.591	3.248	1.529	-5.746	41.718	4.163	0.326	2.877	-8.02	-2.134	42.121
1	16	AA_DT16DG17:DC44DA45_BB	-0.201	-1.446	3.154	-0.733	8.842	27.68	-4.63	0.257	2.582	17.908	1.485	29.041
1	18	AA_DT18DA19:DT42DA43_BB	0.143	-0.821	3.29	3.314	4.276	31.02	-2.304	0.35	3.149	7.919	-6.137	31.476
1	20	AA_DT20DA21:DT40DA41_BB	-0.238	0.182	3.54	-2.748	-0.607	37.939	0.362	-0.014	3.545	-0.931	4.22	38.039
1	22	AA_DT22DT23:DA38DA39_BB	0.051	-0.469	2.901	8.868	3.672	31.677	-1.373	1.234	2.745	6.541	-15.799	33.063
1	23	AA_DT23DA24:DT37DA38_BB	0.452	-0.48	3.584	-3.243	3.869	42.729	-1.069	-0.964	3.488	5.288	4.433	43.012
1	26	AA_DT26DT27:DA34DA35_BB	-0.744	-0.19	3.172	1.63	1.301	34.321	-0.517	1.504	3.125	2.202	-2.76	34.382
1	27	AA_DT27DT28:DA33DA34_BB	0.257	-0.695	3.466	-1.693	1.603	34.205	-1.445	-0.717	3.415	2.722	2.874	34.282
1	28	AA_DT28DA29:DT32DA33_BB	-0.499	0.035	3.816	-7.361	-4.101	39.962	0.583	-0.241	3.823	-5.92	10.627	40.805
1	29	GG_DA1DA2:DT59DT60_HH	0.099	-0.124	3.379	3.831	0.245	40.517	-0.207	0.296	3.373	0.352	-5.516	40.691
1	30	GG_DA2DC3:DG58DT59_HH	-0.207	-0.989	3.515	-3.266	-3.38	36.338	-1.067	-0.159	3.593	-5.392	5.21	36.631
1	34	GG_DA6DT7:DA54DT55_HH	-0.995	-0.699	3.183	2.603	2.661	28.773	-1.952	2.532	3.007	5.326	-5.21	29.008
1	37	GG_DA9DT10:DA51DT52_HH	-0.445	-0.084	3.401	-0.464	-0.258	31.469	-0.105	0.73	3.408	-0.476	0.855	31.474
1	40	GG_DA12DG13:DC48DT49_HH	0.042	0.299	2.937	-7.08	7.047	27.82	-0.776	-1.451	2.831	14.094	14.16	29.525
1	47	GG_DA19DT20:DA41DT42_HH	-0.666	-0.64	3.262	2.436	4.904	28.744	-2.302	1.833	3.047	9.767	-4.851	29.25
1	49	GG_DA21DT22:DA39DT40_HH	0.683	-1.5	3.585	-0.186	2.23	31.123	-3.246	-1.308	3.467	4.15	0.347	31.202
1	52	GG_DA24DA25:DT36DT37_HH	-0.274	-0.034	3.22	-1.261	9.737	33.166	-1.542	0.268	3.095	16.61	2.152	34.549
1	53	GG_DA25DT26:DA35DT36_HH	-0.627	-0.697	2.813	-2.364	3.177	29.653	-1.913	0.795	2.765	6.173	4.593	29.911
1	31	GG_DC3DG4:DC57DG58_HH	0.303	0.011	3.385	5.603	4.471	33.119	-0.732	0.421	3.363	7.731	-9.689	33.865
1	32	GG_DG4DT5:DA56DC57_HH	0.51	-0.666	3.075	-0.251	4.186	26.658	-2.414	-1.152	2.933	9.007	0.54	26.979
1	36	GG_DG8DA9:DT52DC53_HH	0.17	-0.293	3.153	2.284	2.849	41.162	-0.71	-0.006	3.132	4.042	-3.241	41.317
1	41	GG_DG13DG14:DC47DC48_HH	0.423	-1.326	3.629	2.119	7.439	33.065	-3.551	-0.36	3.282	12.853	-3.661	33.933
1	42	GG_DG14DG15:DC46DC47_HH	0.711	-1.707	3.912	-2.991	0.729	36.977	-2.798	-1.59	3.812	1.147	4.706	37.1
1	43	GG_DG15DT16:DA45DC46_HH	-1.129	-0.939	3.243	-1.106	1.507	27.665	-2.32	2.091	3.23	3.146	2.309	27.727
1	45	GG_DG17DT18:DA43DC44_HH	0.403	-1.272	3.303	3.461	0.881	29.28	-2.689	-0.046	3.289	1.735	-6.815	29.493
1	33	GG_DT5DA6:DT55DA56_HH	0.262	-0.819	3.439	-3.109	10.749	29.907	-3.461	-1.047	2.935	19.97	5.777	31.887
1	35	GG_DT7DG8:DC53DA54_HH	-0.528	0.381	3.257	-1.367	7.438	36.482	-0.402	0.644	3.286	11.726	2.155	37.232
1	38	GG_DT10DT11:DA50DA51_HH	0.811	0.35	3.505	4.551	-2.391	41.974	0.751	-0.62	3.545	-3.323	-6.325	42.274
1	39	GG_DT11DA12:DT49DA50_HH	-0.138	2.612	3.249	1.365	-6.236	41.989	4.201	0.32	2.845	-8.642	-1.892	42.449
1	44	GG_DT16DG17:DC44DA45_HH	-0.23	-1.428	3.152	-0.802	9.352	27.697	-4.652	0.299	2.55	18.862	1.619	29.215
1	46	GG_DT18DA19:DT42DA43_HH	0.124	-0.832	3.263	2.673	4.155	31.13	-2.293	0.261	3.128	7.682	-4.941	31.51
1	48	GG_DT20DA21:DT40DA41_HH	-0.233	0.203	3.503	-2.5	-0.423	37.871	0.371	0.016	3.508	-0.651	3.847	37.953
1	50	GG_DT22DT23:DA38DA39_HH	0.056	-0.478	2.901	8.596	2.969	31.6	-1.294	1.203	2.766	5.315	-15.39	32.851
1	51	GG_DT23DA24:DT37DA38_HH	0.483	-0.494	3.494	-3.195	3.828	42.704	-1.075	-0.994	3.396	5.236	4.37	42.981
1	54	GG_DT26DT27:DA34DA35_HH	-0.739	-0.202	3.213	1.633	1.25	34.218	-0.534	1.503	3.167	2.123	-2.772	34.278
1	55	GG_DT27DT28:DA33DA34_HH	0.251	-0.704	3.495	-1.797	1.486	34.088	-1.449	-0.729	3.445	2.531	3.06	34.165
1	56	GG_DT28DA29:DT32DA33_HH	-0.505	0.002	3.775	-7.328	-4.158	40.195	0.532	-0.212	3.787	-5.97	10.523	41.033

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.