2R2T: Base Pair Morphology Parameters

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As of 17-Aug-2022 number of released structures: 12237

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NDB ID: PD1032 PDB ID: 2R2T

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_DA1:DT16_G	0.06	-0.057	-0.118	-22.851	1.333	-4.274
1	5	B_DA5:DT12_G	0.288	0.013	0.212	6.228	-9.978	-0.869
1	6	B_DG6:DC11_G	-0.263	-0.49	-0.061	2.039	-10.813	-0.563
1	2	B_DT2:DA15_G	0.322	-0.372	0.031	-11.356	-2.012	1.482
1	3	B_DT3:DA14_G	-0.123	-0.369	-0.028	-5.506	-12.976	6.199
1	4	B_DT4:DA13_G	-0.143	-0.173	-0.316	5.155	-9.446	9.535
1	7	B_DT7:DA10_G	-0.312	-0.015	-0.009	2.886	-9.164	-4.474
1	8	B_DT8:DA9_G	-0.967	-0.257	0.229	-2.289	-5.255	4.47

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.