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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
PR0306
PDB ID:
2RD2
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
B_A907:U966_B
-0.294
-0.31
0.369
7.064
-11.131
-5.003
1
17
B_A913:A922_B
6.315
-3.97
0.504
3.639
-8.269
-8.978
1
18
B_A914:U908_B
-4.072
-2.088
0.817
1.662
10.459
-97.328
1
25
B_A931:U939_B
0.343
0.005
-0.444
-8.533
-10.295
3.56
1
9
B_A951:U963_B
-0.201
-0.474
0.067
4.424
-4.406
0.008
1
15
B_C911:G924_B
-0.376
-0.195
-0.083
-0.609
-0.052
-0.462
1
16
B_C912:G923_B
0.237
0.018
-0.237
1.538
-4.858
0.634
1
21
B_C927:G943_B
0.076
-0.19
-0.304
12.878
-19.542
5.295
1
22
B_C928:G942_B
-0.204
0.011
-0.03
10.849
-11.78
6.658
1
7
B_C949:G965_B
0.106
-0.42
0.187
3.188
-6.385
-1.426
1
1
B_G902:C971_B
-0.763
0.012
-0.286
-18.212
2.136
-8.653
1
2
B_G903:C970_B
-0.049
-0.083
-0.16
-2.364
-4.882
2.846
1
3
B_G904:C969_B
0.023
-0.308
-0.116
-7.997
-12.334
-2.055
1
4
B_G905:C968_B
-0.328
-0.25
-0.319
-11.906
-9.929
-0.004
1
14
B_G910:C925_B
-0.72
-0.551
-0.059
0.326
-8.486
-2.157
1
19
B_G915:C948_B
0.384
3.806
-0.477
13.332
4.827
166.357
1
20
B_G919:C956_B
0.782
0.281
-0.777
24.348
-28.877
-4.147
1
23
B_G929:C941_B
0.68
-0.217
-0.28
-10.98
-17.384
-6.27
1
24
B_G930:C940_B
-1.436
-0.147
0.248
1.643
-13.033
12.56
1
8
B_G950:C964_B
1.338
-0.197
-0.292
-3.206
-15.555
-2.74
1
10
B_G952:C962_B
-0.523
-0.095
-0.107
4.132
-3.952
-6.31
1
11
B_G953:C961_B
0.036
-0.091
-0.125
-4.524
-1.69
3.734
1
5
B_U906:A967_B
0.067
-0.003
-0.021
-10.495
-4.899
4.895
1
26
B_U932:U938_B
2.952
-1.322
-0.389
-10.287
-5.283
-27.691
1
27
B_U933:A937_B
6.321
-4.772
-0.223
7.235
14.902
-33.384
1
12
B_U954:A958_B
3.328
-0.719
-0.19
12.848
-2.582
-80.937
1
13
B_U955:G918_B
-0.456
-6.874
1.003
27.456
12.283
-109.089
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.