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As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0306  PDB ID: 2RD2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_A907:U966_B-0.294-0.310.3697.064-11.131-5.003
117B_A913:A922_B6.315-3.970.5043.639-8.269-8.978
118B_A914:U908_B-4.072-2.0880.8171.66210.459-97.328
125B_A931:U939_B0.3430.005-0.444-8.533-10.2953.56
19B_A951:U963_B-0.201-0.4740.0674.424-4.4060.008
115B_C911:G924_B-0.376-0.195-0.083-0.609-0.052-0.462
116B_C912:G923_B0.2370.018-0.2371.538-4.8580.634
121B_C927:G943_B0.076-0.19-0.30412.878-19.5425.295
122B_C928:G942_B-0.2040.011-0.0310.849-11.786.658
17B_C949:G965_B0.106-0.420.1873.188-6.385-1.426
11B_G902:C971_B-0.7630.012-0.286-18.2122.136-8.653
12B_G903:C970_B-0.049-0.083-0.16-2.364-4.8822.846
13B_G904:C969_B0.023-0.308-0.116-7.997-12.334-2.055
14B_G905:C968_B-0.328-0.25-0.319-11.906-9.929-0.004
114B_G910:C925_B-0.72-0.551-0.0590.326-8.486-2.157
119B_G915:C948_B0.3843.806-0.47713.3324.827166.357
120B_G919:C956_B0.7820.281-0.77724.348-28.877-4.147
123B_G929:C941_B0.68-0.217-0.28-10.98-17.384-6.27
124B_G930:C940_B-1.436-0.1470.2481.643-13.03312.56
18B_G950:C964_B1.338-0.197-0.292-3.206-15.555-2.74
110B_G952:C962_B-0.523-0.095-0.1074.132-3.952-6.31
111B_G953:C961_B0.036-0.091-0.125-4.524-1.693.734
15B_U906:A967_B0.067-0.003-0.021-10.495-4.8994.895
126B_U932:U938_B2.952-1.322-0.389-10.287-5.283-27.691
127B_U933:A937_B6.321-4.772-0.2237.23514.902-33.384
112B_U954:A958_B3.328-0.719-0.1912.848-2.582-80.937
113B_U955:G918_B-0.456-6.8741.00327.45612.283-109.089

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.