2RD2: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: PR0306 PDB ID: 2RD2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	B_A907:U966_B	-0.294	-0.31	0.369	7.064	-11.131	-5.003
1	17	B_A913:A922_B	6.315	-3.97	0.504	3.639	-8.269	-8.978
1	18	B_A914:U908_B	-4.072	-2.088	0.817	1.662	10.459	-97.328
1	25	B_A931:U939_B	0.343	0.005	-0.444	-8.533	-10.295	3.56
1	9	B_A951:U963_B	-0.201	-0.474	0.067	4.424	-4.406	0.008
1	15	B_C911:G924_B	-0.376	-0.195	-0.083	-0.609	-0.052	-0.462
1	16	B_C912:G923_B	0.237	0.018	-0.237	1.538	-4.858	0.634
1	21	B_C927:G943_B	0.076	-0.19	-0.304	12.878	-19.542	5.295
1	22	B_C928:G942_B	-0.204	0.011	-0.03	10.849	-11.78	6.658
1	7	B_C949:G965_B	0.106	-0.42	0.187	3.188	-6.385	-1.426
1	1	B_G902:C971_B	-0.763	0.012	-0.286	-18.212	2.136	-8.653
1	2	B_G903:C970_B	-0.049	-0.083	-0.16	-2.364	-4.882	2.846
1	3	B_G904:C969_B	0.023	-0.308	-0.116	-7.997	-12.334	-2.055
1	4	B_G905:C968_B	-0.328	-0.25	-0.319	-11.906	-9.929	-0.004
1	14	B_G910:C925_B	-0.72	-0.551	-0.059	0.326	-8.486	-2.157
1	19	B_G915:C948_B	0.384	3.806	-0.477	13.332	4.827	166.357
1	20	B_G919:C956_B	0.782	0.281	-0.777	24.348	-28.877	-4.147
1	23	B_G929:C941_B	0.68	-0.217	-0.28	-10.98	-17.384	-6.27
1	24	B_G930:C940_B	-1.436	-0.147	0.248	1.643	-13.033	12.56
1	8	B_G950:C964_B	1.338	-0.197	-0.292	-3.206	-15.555	-2.74
1	10	B_G952:C962_B	-0.523	-0.095	-0.107	4.132	-3.952	-6.31
1	11	B_G953:C961_B	0.036	-0.091	-0.125	-4.524	-1.69	3.734
1	5	B_U906:A967_B	0.067	-0.003	-0.021	-10.495	-4.899	4.895
1	26	B_U932:U938_B	2.952	-1.322	-0.389	-10.287	-5.283	-27.691
1	27	B_U933:A937_B	6.321	-4.772	-0.223	7.235	14.902	-33.384
1	12	B_U954:A958_B	3.328	-0.719	-0.19	12.848	-2.582	-80.937
1	13	B_U955:G918_B	-0.456	-6.874	1.003	27.456	12.283	-109.089

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.