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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
PR0306
PDB ID:
2RD2
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
BB_A907C949:G965U966_BB
-0.368
-1.683
3.416
3.138
0.243
43.843
-2.272
0.8
3.374
0.325
-4.196
43.95
1
16
BB_A913A914:U908A922_BB
-0.735
-2.918
3.17
1.874
-9.66
43.588
-2.905
1.15
3.671
-12.815
-2.486
44.632
1
17
BB_A914G915:C948U908_BB
1.954
-2.598
3.717
5.174
19.155
-73.266
1.419
1.785
4.072
-15.772
4.26
-75.54
1
22
BB_A931U932:U938U939_BB
-1.423
-1.672
3.473
2.565
5.188
42.075
-2.846
2.231
3.167
7.185
-3.552
42.453
1
9
BB_A951G952:C962U963_BB
0.375
-1.947
3.186
1.35
7.523
28.455
-5.281
-0.478
2.611
14.966
-2.686
29.443
1
14
BB_C911C912:G923G924_BB
0.669
-2.11
3.13
6.455
5.801
29.236
-5.078
-0.09
2.751
11.185
-12.447
30.47
1
15
BB_C912A913:A922G923_BB
-0.385
-1.419
3.304
1.177
9.978
55.662
-2.046
0.471
3.022
10.59
-1.25
56.49
1
18
BB_C927C928:G942G943_BB
0.006
-1.605
3.337
-4.117
7.295
33.092
-3.86
-0.644
2.906
12.558
7.088
34.107
1
19
BB_C928G929:C941G942_BB
-0.676
-2.187
3.682
1.921
18.222
34.039
-5.494
1.254
2.23
28.696
-3.026
38.528
1
7
BB_C949G950:C964G965_BB
-0.937
-1.892
3.584
4.392
5.486
33.69
-4.085
2.293
3.104
9.34
-7.478
34.394
1
1
BB_G902G903:C970C971_BB
0.657
-1.56
2.973
-1.524
3.324
35.169
-3.002
-1.28
2.788
5.483
2.514
35.352
1
2
BB_G903G904:C969C970_BB
0.309
-1.818
3.41
0.55
5.774
31.506
-4.331
-0.461
3.042
10.523
-1.003
32.022
1
3
BB_G904G905:C968C969_BB
0.639
-2.175
3.278
4.493
9.744
29.361
-5.733
-0.407
2.514
18.465
-8.514
31.22
1
4
BB_G905U906:A967C968_BB
0.22
-1.425
3.282
1.621
4.665
30.038
-3.623
-0.103
3.039
8.925
-3.1
30.433
1
13
BB_G910C911:G924C925_BB
-0.354
-1.932
3.249
0.343
-0.128
37.145
-3.016
0.602
3.252
-0.201
-0.538
37.146
1
20
BB_G929G930:C940C941_BB
1.05
-1.661
2.809
-4.394
7.617
22.743
-5.726
-3.52
1.925
18.454
10.646
24.363
1
21
BB_G930A931:U939C940_BB
-0.873
-1.512
3.575
3.524
3.115
39.763
-2.588
1.706
3.365
4.56
-5.16
40.029
1
8
BB_G950A951:U963C964_BB
0.071
-1.399
2.905
-0.58
6.32
24.829
-4.652
-0.298
2.476
14.399
1.321
25.615
1
10
BB_G952G953:C961C962_BB
0.781
-2.01
3.355
3.201
5.578
36.706
-3.881
-0.802
3.082
8.775
-5.036
37.246
1
11
BB_G953U954:A958C961_BB
-1.913
-1.991
2.932
1.488
3.053
75.651
-1.703
1.598
2.83
2.488
-1.213
75.716
1
5
BB_U906A907:U966A967_BB
0.25
-1.498
2.747
0.626
6.473
30.473
-3.772
-0.371
2.39
12.142
-1.173
31.143
1
23
BB_U932U933:A937U938_BB
-0.263
-1.957
3.015
7.634
3.214
48.837
-2.552
0.821
2.82
3.855
-9.156
49.492
1
12
BB_U954U955:G918A958_BB
0.841
-1.312
3.781
3.655
7.78
59.422
-1.751
-0.635
3.641
7.804
-3.666
59.985
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.