2RD2: Base Pair Morphology Step Parameters

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NDB ID: PR0306 PDB ID: 2RD2

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	BB_A907C949:G965U966_BB	-0.368	-1.683	3.416	3.138	0.243	43.843	-2.272	0.8	3.374	0.325	-4.196	43.95
1	16	BB_A913A914:U908A922_BB	-0.735	-2.918	3.17	1.874	-9.66	43.588	-2.905	1.15	3.671	-12.815	-2.486	44.632
1	17	BB_A914G915:C948U908_BB	1.954	-2.598	3.717	5.174	19.155	-73.266	1.419	1.785	4.072	-15.772	4.26	-75.54
1	22	BB_A931U932:U938U939_BB	-1.423	-1.672	3.473	2.565	5.188	42.075	-2.846	2.231	3.167	7.185	-3.552	42.453
1	9	BB_A951G952:C962U963_BB	0.375	-1.947	3.186	1.35	7.523	28.455	-5.281	-0.478	2.611	14.966	-2.686	29.443
1	14	BB_C911C912:G923G924_BB	0.669	-2.11	3.13	6.455	5.801	29.236	-5.078	-0.09	2.751	11.185	-12.447	30.47
1	15	BB_C912A913:A922G923_BB	-0.385	-1.419	3.304	1.177	9.978	55.662	-2.046	0.471	3.022	10.59	-1.25	56.49
1	18	BB_C927C928:G942G943_BB	0.006	-1.605	3.337	-4.117	7.295	33.092	-3.86	-0.644	2.906	12.558	7.088	34.107
1	19	BB_C928G929:C941G942_BB	-0.676	-2.187	3.682	1.921	18.222	34.039	-5.494	1.254	2.23	28.696	-3.026	38.528
1	7	BB_C949G950:C964G965_BB	-0.937	-1.892	3.584	4.392	5.486	33.69	-4.085	2.293	3.104	9.34	-7.478	34.394
1	1	BB_G902G903:C970C971_BB	0.657	-1.56	2.973	-1.524	3.324	35.169	-3.002	-1.28	2.788	5.483	2.514	35.352
1	2	BB_G903G904:C969C970_BB	0.309	-1.818	3.41	0.55	5.774	31.506	-4.331	-0.461	3.042	10.523	-1.003	32.022
1	3	BB_G904G905:C968C969_BB	0.639	-2.175	3.278	4.493	9.744	29.361	-5.733	-0.407	2.514	18.465	-8.514	31.22
1	4	BB_G905U906:A967C968_BB	0.22	-1.425	3.282	1.621	4.665	30.038	-3.623	-0.103	3.039	8.925	-3.1	30.433
1	13	BB_G910C911:G924C925_BB	-0.354	-1.932	3.249	0.343	-0.128	37.145	-3.016	0.602	3.252	-0.201	-0.538	37.146
1	20	BB_G929G930:C940C941_BB	1.05	-1.661	2.809	-4.394	7.617	22.743	-5.726	-3.52	1.925	18.454	10.646	24.363
1	21	BB_G930A931:U939C940_BB	-0.873	-1.512	3.575	3.524	3.115	39.763	-2.588	1.706	3.365	4.56	-5.16	40.029
1	8	BB_G950A951:U963C964_BB	0.071	-1.399	2.905	-0.58	6.32	24.829	-4.652	-0.298	2.476	14.399	1.321	25.615
1	10	BB_G952G953:C961C962_BB	0.781	-2.01	3.355	3.201	5.578	36.706	-3.881	-0.802	3.082	8.775	-5.036	37.246
1	11	BB_G953U954:A958C961_BB	-1.913	-1.991	2.932	1.488	3.053	75.651	-1.703	1.598	2.83	2.488	-1.213	75.716
1	5	BB_U906A907:U966A967_BB	0.25	-1.498	2.747	0.626	6.473	30.473	-3.772	-0.371	2.39	12.142	-1.173	31.143
1	23	BB_U932U933:A937U938_BB	-0.263	-1.957	3.015	7.634	3.214	48.837	-2.552	0.821	2.82	3.855	-9.156	49.492
1	12	BB_U954U955:G918A958_BB	0.841	-1.312	3.781	3.655	7.78	59.422	-1.751	-0.635	3.641	7.804	-3.666	59.985

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.