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As of 11-May-2022 number of released structures: 12077
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NDB ID: PR0307  PDB ID: 2RE8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16B_A907:U966_B-0.426-0.2620.35611.453-8.658-4.956
117B_A913:A922_B6.392-4.045-0.095.146-5.899-7.393
118B_A914:U908_B-4.159-2.1250.9685.05314.893-96.395
125B_A931:U939_B0.024-0.194-0.335-9.138-4.1891.935
19B_A951:U963_B0.011-0.3760.052-4.424-8.0144.473
115B_C911:G924_B-0.032-0.2410.145-2.883-3.3920.358
116B_C912:G923_B0.2610.003-0.209-0.54-5.4950.782
121B_C927:G943_B0.315-0.2580.1389.035-18.8484.047
122B_C928:G942_B-0.193-0.105-0.41312.583-12.0666.039
17B_C949:G965_B-0.043-0.287-0.1466.171-9.099-4.934
11B_G902:C971_B-0.355-0.189-0.214-12.3563.054-9.145
12B_G903:C970_B-0.397-0.1940.1020.823-5.4972.233
13B_G904:C969_B-0.217-0.265-0.069-9.982-15.566-1.608
14B_G905:C968_B-0.312-0.125-0.4-17.298-17.5291.103
114B_G910:C925_B-0.869-0.441-0.053-3.317-6.4061.647
119B_G915:C948_B0.3633.918-0.39613.0618.393167.969
120B_G919:C956_B0.1010.0590.27420.417-17.116-9.089
123B_G929:C941_B0.746-0.337-0.243-6.698-13.869-7.18
124B_G930:C940_B-1.0080.2530.135-8.602-18.15317.425
18B_G950:C964_B0.504-0.127-0.386-7.494-15.462-0.225
110B_G952:C962_B-0.743-0.393-0.169-1.102-8.23-5.776
111B_G953:C961_B0.3230.0060.265-6.233-8.5158.844
15B_U906:A967_B0.1090.0960.341-12.083-10.0626.772
126B_U932:U938_B2.851-1.245-0.467-11.148-3.707-27.942
127B_U933:A937_B6.41-4.7680.1056.99918.325-34.048
112B_U954:A958_B3.337-1.2550.8670.78910.184-80.577
113B_U955:G918_B-0.361-6.8460.7423.00816.276-102.992

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.