2RE8: Base Pair Morphology Step Parameters

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NDB ID: PR0307 PDB ID: 2RE8

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	BB_A907C949:G965U966_BB	-0.497	-1.665	3.41	3.444	3.301	42.696	-2.607	1.026	3.231	4.517	-4.713	42.95
1	16	BB_A913A914:U908A922_BB	-0.71	-2.661	3.138	3.642	-6.43	43.068	-2.956	1.306	3.413	-8.682	-4.918	43.668
1	17	BB_A914G915:C948U908_BB	1.99	-2.458	3.584	1.809	17.78	-72.718	1.381	1.708	3.97	-14.778	1.504	-74.586
1	22	BB_A931U932:U938U939_BB	-1.177	-1.771	3.483	3.999	2.031	43.24	-2.596	1.991	3.284	2.747	-5.409	43.461
1	9	BB_A951G952:C962U963_BB	-0.077	-1.914	3.234	2.148	3.914	26.596	-5.051	0.685	2.913	8.431	-4.628	26.962
1	14	BB_C911C912:G923G924_BB	0.613	-2.28	3.166	6.262	6.183	28.265	-5.666	0.015	2.689	12.291	-12.447	29.577
1	15	BB_C912A913:A922G923_BB	-0.31	-1.279	3.197	2.946	5.781	56.099	-1.664	0.486	3.044	6.124	-3.12	56.443
1	18	BB_C927C928:G942G943_BB	-0.191	-1.943	3.242	-0.054	5.252	32.143	-4.331	0.332	2.897	9.407	0.097	32.558
1	19	BB_C928G929:C941G942_BB	-0.583	-1.901	3.74	-0.264	13.736	33.835	-5.019	0.894	2.789	22.485	0.432	36.443
1	7	BB_C949G950:C964G965_BB	-0.659	-2.031	3.713	2.163	7.792	29.718	-5.429	1.687	3.041	14.848	-4.121	30.775
1	1	BB_G902G903:C970C971_BB	0.616	-1.837	2.984	-2.041	2.459	30.579	-3.89	-1.515	2.785	4.646	3.856	30.742
1	2	BB_G903G904:C969C970_BB	0.374	-1.73	3.495	2.8	7.275	34.546	-3.939	-0.195	3.098	12.061	-4.642	35.389
1	3	BB_G904G905:C968C969_BB	0.942	-2.197	3.379	6.441	12.984	28.743	-6.129	-0.632	2.347	24.301	-12.055	32.121
1	4	BB_G905U906:A967C968_BB	0.154	-1.21	3.171	-2.254	3.631	32.123	-2.775	-0.653	3.002	6.526	4.051	32.398
1	13	BB_G910C911:G924C925_BB	-0.507	-1.75	3.232	-0.223	-0.696	38.439	-2.571	0.742	3.265	-1.056	0.338	38.445
1	20	BB_G929G930:C940C941_BB	1.329	-1.782	3.072	0.181	11.831	24.893	-6.131	-2.758	2.038	25.675	-0.392	27.522
1	21	BB_G930A931:U939C940_BB	-1.105	-1.752	3.273	-0.648	2.948	35.038	-3.332	1.735	3.139	4.885	1.074	35.164
1	8	BB_G950A951:U963C964_BB	0.232	-1.238	3.096	-3.458	6.291	31.226	-3.273	-0.985	2.759	11.498	6.32	32.02
1	10	BB_G952G953:C961C962_BB	1.422	-2.134	3.176	1.414	1.964	36.851	-3.625	-2.062	3.113	3.103	-2.234	36.928
1	11	BB_G953U954:A958C961_BB	-2.293	-2.097	3.113	-0.305	3.886	77.656	-1.774	1.819	3.03	3.097	0.243	77.738
1	5	BB_U906A907:U966A967_BB	0.072	-1.651	2.633	2.556	4.219	28.557	-4.019	0.29	2.367	8.473	-5.133	28.971
1	23	BB_U932U933:A937U938_BB	-0.235	-2.044	2.986	7.063	5.347	51.917	-2.613	0.67	2.726	6.058	-8.002	52.615
1	12	BB_U954U955:G918A958_BB	1.018	-1.631	3.35	7.201	-0.612	58.743	-1.62	-0.648	3.458	-0.621	-7.31	59.147

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.