A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: PR0307  PDB ID: 2RE8 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16BB_A907C949:G965U966_BB-0.497-1.6653.413.4443.30142.696-2.6071.0263.2314.517-4.71342.95
116BB_A913A914:U908A922_BB-0.71-2.6613.1383.642-6.4343.068-2.9561.3063.413-8.682-4.91843.668
117BB_A914G915:C948U908_BB1.99-2.4583.5841.80917.78-72.7181.3811.7083.97-14.7781.504-74.586
122BB_A931U932:U938U939_BB-1.177-1.7713.4833.9992.03143.24-2.5961.9913.2842.747-5.40943.461
19BB_A951G952:C962U963_BB-0.077-1.9143.2342.1483.91426.596-5.0510.6852.9138.431-4.62826.962
114BB_C911C912:G923G924_BB0.613-2.283.1666.2626.18328.265-5.6660.0152.68912.291-12.44729.577
115BB_C912A913:A922G923_BB-0.31-1.2793.1972.9465.78156.099-1.6640.4863.0446.124-3.1256.443
118BB_C927C928:G942G943_BB-0.191-1.9433.242-0.0545.25232.143-4.3310.3322.8979.4070.09732.558
119BB_C928G929:C941G942_BB-0.583-1.9013.74-0.26413.73633.835-5.0190.8942.78922.4850.43236.443
17BB_C949G950:C964G965_BB-0.659-2.0313.7132.1637.79229.718-5.4291.6873.04114.848-4.12130.775
11BB_G902G903:C970C971_BB0.616-1.8372.984-2.0412.45930.579-3.89-1.5152.7854.6463.85630.742
12BB_G903G904:C969C970_BB0.374-1.733.4952.87.27534.546-3.939-0.1953.09812.061-4.64235.389
13BB_G904G905:C968C969_BB0.942-2.1973.3796.44112.98428.743-6.129-0.6322.34724.301-12.05532.121
14BB_G905U906:A967C968_BB0.154-1.213.171-2.2543.63132.123-2.775-0.6533.0026.5264.05132.398
113BB_G910C911:G924C925_BB-0.507-1.753.232-0.223-0.69638.439-2.5710.7423.265-1.0560.33838.445
120BB_G929G930:C940C941_BB1.329-1.7823.0720.18111.83124.893-6.131-2.7582.03825.675-0.39227.522
121BB_G930A931:U939C940_BB-1.105-1.7523.273-0.6482.94835.038-3.3321.7353.1394.8851.07435.164
18BB_G950A951:U963C964_BB0.232-1.2383.096-3.4586.29131.226-3.273-0.9852.75911.4986.3232.02
110BB_G952G953:C961C962_BB1.422-2.1343.1761.4141.96436.851-3.625-2.0623.1133.103-2.23436.928
111BB_G953U954:A958C961_BB-2.293-2.0973.113-0.3053.88677.656-1.7741.8193.033.0970.24377.738
15BB_U906A907:U966A967_BB0.072-1.6512.6332.5564.21928.557-4.0190.292.3678.473-5.13328.971
123BB_U932U933:A937U938_BB-0.235-2.0442.9867.0635.34751.917-2.6130.672.7266.058-8.00252.615
112BB_U954U955:G918A958_BB1.018-1.6313.357.201-0.61258.743-1.62-0.6483.458-0.621-7.3159.147

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.