2STT: Base Pair Morphology Step Parameters

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NDB ID: 2STT PDB ID: 2STT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	BB_DA4DG5:DC30DT31_CC	0.169	0.517	3.547	-1.125	2.423	37.303	0.459	-0.424	3.566	3.782	1.755	37.395
1	8	BB_DA10DA11:DT24DT25_CC	-0.315	0.092	3.733	2.427	4.229	35.608	-0.538	0.906	3.691	6.875	-3.946	35.929
1	9	BB_DA11DG12:DC23DT24_CC	0.259	-0.051	3.22	-6.581	-6.801	31.338	1.062	-1.575	3.049	-12.246	11.849	32.702
1	2	BB_DC2DG3:DC32DG33_CC	0.154	1.004	4.597	-0.465	-7.305	39.32	2.627	-0.299	4.347	-10.744	0.684	39.969
1	13	BB_DC15DG16:DC19DG20_CC	-0.444	1.206	4.026	0.211	10.556	36.557	0.126	0.716	4.2	16.412	-0.328	38.001
1	3	BB_DG3DA4:DT31DC32_CC	0.153	0.427	3.596	2.927	-4.972	34.501	1.53	0.229	3.503	-8.311	-4.893	34.966
1	5	BB_DG5DC6:DG29DC30_CC	0.227	-1.211	3.934	-1.768	6.563	29.805	-3.812	-0.838	3.573	12.555	3.383	30.553
1	6	BB_DG8DG9:DC26DC27_CC	0.831	-0.341	3.905	0.899	12.79	28.398	-3.523	-1.347	3.458	24.55	-1.725	31.104
1	7	BB_DG9DA10:DT25DC26_CC	0.048	-1.167	3.224	0.756	9.303	30.927	-3.646	0.04	2.766	16.968	-1.379	32.272
1	10	BB_DG12DT13:DA22DC23_CC	0.03	0.826	4.25	11.18	5.814	37.922	0.323	1.663	4.172	8.659	-16.651	39.888
1	14	BB_DG16DA17:DT18DC19_CC	0.633	-0.007	3.572	0.459	-3.986	32.579	0.736	-1.034	3.556	-7.072	-0.815	32.819
1	1	BB_DT1DC2:DG33DA34_CC	0.553	0.012	3.542	1.148	8.827	28.888	-1.928	-0.808	3.416	17.186	-2.235	30.2
1	11	BB_DT13DT14:DA21DA22_CC	0.14	0.071	3.517	-2.606	0.684	35.086	0.009	-0.649	3.498	1.132	4.315	35.186
1	12	BB_DT14DC15:DG20DA21_CC	-0.797	0.271	3.779	-3.991	-9.72	35.121	1.98	0.632	3.644	-15.68	6.438	36.611

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.