A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: 2TOB  PDB ID: 2TOB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A4:U23_A0.131-0.1150.3942.987-7.3225.314
12A_C5:G22_A0.501-0.215-0.07615.78-18.968-6.275
15A_G8:U19_A-2.43-0.126-0.629-1.092-6.653-73.92
16A_G9:A18_A-0.0171.327-0.1497.00614.962-24.398
13A_U6:A21_A-0.327-0.166-0.0846.12-6.299-1.711
14A_U7:G20_A2.405-0.8090.1145.881-9.369-12.004
17A_U10:A17_A0.246-0.045-0.1768.6462.453.279
18A_U11:U16_A2.926-1.8840.03315.979-11.2374.325

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.