2TPK: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 2TPK PDB ID: 2TPK

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A5:U18_A	-0.028	-0.092	-0.12	-1.277	11.031	-5.954
1	8	A_A30:U13_A	0.035	-0.071	-0.124	-0.625	11.338	-5.646
1	10	A_A32:U11_A	-0.041	-0.089	-0.148	-1.442	10.965	-5.784
1	4	A_C6:G17_A	0.24	-0.248	-0.126	1.371	12.449	-6.554
1	5	A_C7:G16_A	0.446	-0.156	-0.288	18.353	0.743	-2.288
1	7	A_C29:G14_A	0.22	-0.24	-0.208	0.496	10.978	-6.302
1	12	A_C34:G9_A	0.42	-0.265	-0.391	-3.306	1.399	-1.34
1	2	A_G4:C19_A	-0.185	-0.23	-0.116	-0.561	9.439	-5.915
1	11	A_G33:C10_A	-0.274	-0.265	-0.225	0.844	11.454	-6.336
1	1	A_U3:A20_A	0.018	-0.081	-0.062	0.78	12.95	-5.46
1	6	A_U28:A15_A	0.13	-0.16	-0.473	13.49	-15.948	1.437
1	9	A_U31:A12_A	0.006	-0.078	-0.113	1.417	10.556	-5.869

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.