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As of 25-May-2022 number of released structures: 12098
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NDB ID: TRNA07  PDB ID: 2TRA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_5MC48:G64_A0.073-0.1530.2310.014-5.766-3.892
113A_5MU53:A57_A4.562-2.3640.3588.32712.392-93.764
17A_A7:U65_A0.1510.0940.401-2.216-11.513-10.302
125A_A14:U8_A-4.057-2.0280.5772.8156.687-97.097
126A_A15:U47_A0.2940.894-0.7163.993-1.356168.947
120A_A44:G26_A0.0121.425-0.192-18.407-14.554-20.697
12A_C2:G70_A0.552-0.050.0785.493-4.604-0.328
13A_C3:G69_A-0.59-0.03-0.2818.996.385-0.055
118A_C42:G28_A0.105-0.213-0.0432.919-7.8420.716
119A_C43:G27_A-0.581-0.1430.41-1.535-11.288-4.033
14A_G4:C68_A0.2590.0470.0432.725-4.4227.41
16A_G6:C66_A-0.133-0.1570.2420.254-10.287-1.12
121A_G10:U25_A-2.338-0.5580.3234.9454.263-1.994
127A_G18:C55_A0.061-0.044-0.114-5.147-24.495-0.755
115A_G39:C31_A-0.365-0.135-0.1016.318-15.428-0.134
117A_G41:C29_A-0.525-0.2920.4924.409-8.6940.474
19A_G49:C63_A-0.164-0.155-0.2736.645-2.4151.91
110A_G50:C62_A-0.149-0.214-0.503-4.5362.017-0.701
111A_G51:C61_A-0.046-0.126-0.0814.19-3.177-0.488
112A_G52:C60_A-0.134-0.14-0.013-6.9276.425-2.189
124A_PSU13:G22_A1.459-0.5080.4270.94-11.931-2.501
114A_PSU54:G17_A0.2-5.8380.47932.6386.876-106.615
11A_U1:A71_A0.438-0.235-0.21512.5741.6616.382
15A_U5:G67_A2.196-0.474-0.229-1.4761.9944.469
122A_U11:A24_A0.057-0.1470.352-1.521-13.459-1.146
123A_U12:A23_A-0.111-0.0070.1-6.2311.193-6.756
116A_U40:G30_A1.801-0.3320.207-6.3-12.792-2.242

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.