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As of 18-May-2022 number of released structures: 12082
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NDB ID: TRNA07  PDB ID: 2TRA 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18AA_5MC48G49:C63G64_AA-0.28-1.6533.023-0.25614.01436.849-3.8510.3912.27221.2490.38839.338
113AA_5MU53PSU54:G17A57_AA0.603-1.4013.43315.415-0.92344.685-1.6690.623.476-1.173-19.59547.148
17AA_A75MC48:G64U65_AA0.197-1.6492.8671.5686.07631.869-3.837-0.1242.52410.934-2.82132.466
124AA_A14A15:U47U8_AA1.156-2.0053.7815.98318.606-91.1210.9630.9353.985-12.9114.151-92.741
119AA_A44G10:U25G26_AA-2.847-3.1862.7465.03315.00253.379-4.0173.2571.61216.3-5.46955.51
12AA_C2C3:G69G70_AA-0.164-1.8683.3371.8938.97828.163-5.4320.6952.61317.86-3.76629.591
13AA_C3G4:C68G69_AA0.521-1.5433.3293.25413.16933.415-4.262-0.4072.59521.818-5.39135.991
117AA_C42C43:G27G28_AA0.189-1.7343.508-0.7172.31134.517-3.292-0.4353.3833.8881.20634.6
118AA_C43A44:G26G27_AA-0.64-1.7873.3577.90313.27432.377-4.6392.0712.26422.292-13.27235.784
14AA_G4U5:G67C68_AA0.087-1.5573.5960.9530.88239.171-2.436-0.0043.5631.315-1.42139.191
16AA_G6A7:U65C66_AA-0.364-0.8673.5133.43522.20234.342-3.6960.9012.48533.531-5.18740.852
120AA_G10U11:A24U25_AA-0.605-1.453.37-2.2866.47446.988-2.3280.5663.1798.0692.84947.459
114AA_G39U40:G30C31_AA0.051-1.3183.77-2.044-0.45141.078-1.82-0.3283.777-0.6422.9141.129
116AA_G41C42:G28C29_AA-0.992-1.3093.1612.7084.17938.689-2.4331.7922.9366.276-4.06738.996
19AA_G49G50:C62C63_AA-0.582-1.5073.7381.28612.19729.883-5.01.2892.89122.497-2.37232.248
110AA_G50G51:C61C62_AA0.297-1.6923.231-6.2434.89636.638-3.244-1.2392.9017.6779.7937.459
111AA_G51G52:C60C61_AA0.161-2.7833.2982.202-2.43625.386-5.5560.2933.546-5.514-4.98325.594
112AA_G525MU53:A57C60_AA-2.577-2.1813.1542.577-2.20390.876-1.4881.8573.137-1.545-1.80890.925
123AA_PSU13A14:U8G22_AA-0.741-1.4273.1473.826-10.55476.186-0.8470.7053.258-8.509-3.08476.885
11AA_U1C2:G70A71_AA-0.209-1.5033.045-0.2727.34134.303-3.4710.3112.67812.2730.45535.058
15AA_U5G6:C66G67_AA0.325-1.9982.7764.3227.1521.448-6.9290.3442.03818.339-11.08623.0
121AA_U11U12:A23A24_AA-0.801-1.2953.404-3.0088.99633.982-3.4790.8763.03215.0325.02635.243
122AA_U12PSU13:G22A23_AA0.651-2.6543.167-2.717-3.29522.46-5.504-2.6263.414-8.3636.89622.858
115AA_U40G41:C29G30_AA0.066-2.5282.825-2.146.35617.601-10.17-1.0241.78819.8616.68818.826

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.