2U2A: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2U2A PDB ID: 2U2A

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_A5:U16_A	-0.159	-0.427	-0.068	0.048	-0.702	1.44
1	4	A_C4:G17_A	0.905	-0.436	0.019	-0.915	-3.15	2.25
1	1	A_G1:C20_A	-0.185	-0.47	0.01	-1.344	-0.894	-3.056
1	2	A_G2:C19_A	-1.077	-0.324	0.029	0.134	-3.198	5.752
1	6	A_G6:C15_A	-1.038	-0.356	-0.077	-1.651	-1.047	5.385
1	8	A_G8:A13_A	6.052	-3.119	1.775	-0.67	-1.751	-6.704
1	3	A_U3:A18_A	0.109	-0.357	0.017	0.469	-1.228	2.023
1	7	A_U7:A14_A	-0.192	-0.301	0.505	-15.501	-2.091	-3.329

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.