A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
Search for released structures

NDB ID: NA0309  PDB ID: 2V4R 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16P_DA6:DT13_T0.4650.111-0.1660.455-16.471-0.237
17P_DA7:DT12_T0.223-0.2310.1156.959-5.195-2.652
110P_DA10:DT9_T0.86-0.235-0.077-12.366-7.5552.736
113P_DC13:DG6_T0.06-0.186-0.299.444-0.5460.206
11P_DG1:DC18_T-0.655-0.058-0.34-8.392-7.0780.621
12P_DG2:DC17_T-0.239-0.044-0.706-8.772-0.9863.971
13P_DG3:DC16_T0.256-0.154-0.0830.157-5.75-7.716
14P_DG4:DC15_T0.27-0.140.04810.43-1.9274.586
15P_DG5:DC14_T-0.2830.258-0.172.003-2.0146.425
18P_DG8:DC11_T0.383-0.3520.0385.274-6.113-3.953
19P_DG9:DC10_T-0.311-0.018-0.099-7.55-8.0793.815
111P_DT11:DA8_T-0.437-0.176-0.15-0.444-4.887-0.956
112P_DT12:DA7_T-0.73-0.131-0.3772.4820.011-1.333

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.