2V4R: Base Pair Morphology Step Parameters

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NDB ID: NA0309 PDB ID: 2V4R

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	PP_DA6DA7:DT12DT13_TT	-0.068	-0.346	3.09	-3.25	2.986	32.931	-1.076	-0.394	3.04	5.237	5.701	33.217
1	7	PP_DA7DG8:DC11DT12_TT	-0.036	-0.306	3.412	2.56	3.913	34.431	-1.134	0.466	3.347	6.573	-4.3	34.738
1	10	PP_DA10DT11:DA8DT9_TT	0.106	-0.821	3.06	1.137	0.538	24.626	-2.076	0.076	3.043	1.261	-2.664	24.658
1	1	PP_DG1DG2:DC17DC18_TT	0.971	0.162	3.301	4.295	7.799	33.116	-0.995	-0.95	3.348	13.384	-7.372	34.26
1	2	PP_DG2DG3:DC16DC17_TT	-2.088	0.079	3.13	-9.85	8.444	31.017	-1.329	1.905	3.516	14.994	17.491	33.559
1	3	PP_DG3DG4:DC15DC16_TT	0.758	-0.369	3.157	-2.249	9.556	29.441	-2.423	-1.826	2.837	18.176	4.278	31.0
1	4	PP_DG4DG5:DC14DC15_TT	-0.266	-0.536	3.438	-0.333	6.09	26.612	-2.705	0.477	3.24	13.014	0.711	27.29
1	5	PP_DG5DA6:DT13DC14_TT	-0.518	-0.179	3.317	-0.436	3.842	36.676	-0.81	0.759	3.288	6.085	0.69	36.873
1	8	PP_DG8DG9:DC10DC11_TT	0.913	-1.137	3.545	2.162	6.516	31.008	-3.347	-1.25	3.298	12.005	-3.982	31.74
1	9	PP_DG9DA10:DT9DC10_TT	-0.589	-0.601	3.427	0.443	1.185	38.7	-1.058	0.945	3.401	1.787	-0.668	38.72
1	11	PP_DT11DT12:DA7DA8_TT	0.694	-0.463	3.312	3.731	3.523	34.605	-1.31	-0.582	3.305	5.883	-6.229	34.971
1	12	PP_DT12DC13:DG6DA7_TT	-0.239	-0.107	3.281	0.208	11.485	26.242	-2.817	0.532	2.971	23.893	-0.432	28.606

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.