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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0252
PDB ID:
2W8L
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
6
P_DA6:DT13_T
0.382
0.1
-0.009
-0.615
-13.242
0.028
1
7
P_DA7:DT12_T
0.411
0.104
0.124
-2.378
-12.45
3.589
1
10
P_DA10:DT9_T
0.545
-0.039
-0.052
-6.239
-18.195
-2.585
1
13
P_DC13:DG6_T
0.089
0.306
-1.112
23.047
-5.13
-0.861
1
1
P_DG1:DC18_T
-0.396
-0.206
-0.22
-6.743
5.557
-6.6
1
2
P_DG2:DC17_T
0.179
-0.138
-0.264
2.957
-3.353
-0.971
1
3
P_DG3:DC16_T
-0.068
-0.212
-0.196
4.92
-5.507
-3.981
1
4
P_DG4:DC15_T
0.08
-0.222
-0.078
6.947
-7.111
2.618
1
5
P_DG5:DC14_T
0.776
0.117
0.251
9.218
2.188
1.995
1
8
P_DG8:DC11_T
0.597
0.065
0.562
7.729
-7.077
-1.704
1
9
P_DG9:DC10_T
-0.293
0.085
0.27
-4.638
-10.1
0.714
1
11
P_DT11:DA8_T
0.004
0.333
0.417
-0.173
-16.841
5.699
1
12
P_DT12:DA7_T
0.455
-0.015
-0.407
3.038
9.733
12.176
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.