2W8L: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: NA0252 PDB ID: 2W8L

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	P_DA6:DT13_T	0.382	0.1	-0.009	-0.615	-13.242	0.028
1	7	P_DA7:DT12_T	0.411	0.104	0.124	-2.378	-12.45	3.589
1	10	P_DA10:DT9_T	0.545	-0.039	-0.052	-6.239	-18.195	-2.585
1	13	P_DC13:DG6_T	0.089	0.306	-1.112	23.047	-5.13	-0.861
1	1	P_DG1:DC18_T	-0.396	-0.206	-0.22	-6.743	5.557	-6.6
1	2	P_DG2:DC17_T	0.179	-0.138	-0.264	2.957	-3.353	-0.971
1	3	P_DG3:DC16_T	-0.068	-0.212	-0.196	4.92	-5.507	-3.981
1	4	P_DG4:DC15_T	0.08	-0.222	-0.078	6.947	-7.111	2.618
1	5	P_DG5:DC14_T	0.776	0.117	0.251	9.218	2.188	1.995
1	8	P_DG8:DC11_T	0.597	0.065	0.562	7.729	-7.077	-1.704
1	9	P_DG9:DC10_T	-0.293	0.085	0.27	-4.638	-10.1	0.714
1	11	P_DT11:DA8_T	0.004	0.333	0.417	-0.173	-16.841	5.699
1	12	P_DT12:DA7_T	0.455	-0.015	-0.407	3.038	9.733	12.176

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.