A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: NA0252  PDB ID: 2W8L 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16P_DA6:DT13_T0.3820.1-0.009-0.615-13.2420.028
17P_DA7:DT12_T0.4110.1040.124-2.378-12.453.589
110P_DA10:DT9_T0.545-0.039-0.052-6.239-18.195-2.585
113P_DC13:DG6_T0.0890.306-1.11223.047-5.13-0.861
11P_DG1:DC18_T-0.396-0.206-0.22-6.7435.557-6.6
12P_DG2:DC17_T0.179-0.138-0.2642.957-3.353-0.971
13P_DG3:DC16_T-0.068-0.212-0.1964.92-5.507-3.981
14P_DG4:DC15_T0.08-0.222-0.0786.947-7.1112.618
15P_DG5:DC14_T0.7760.1170.2519.2182.1881.995
18P_DG8:DC11_T0.5970.0650.5627.729-7.077-1.704
19P_DG9:DC10_T-0.2930.0850.27-4.638-10.10.714
111P_DT11:DA8_T0.0040.3330.417-0.173-16.8415.699
112P_DT12:DA7_T0.455-0.015-0.4073.0389.73312.176

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.