2W8L: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471

Search for released structures

NDB ID: NA0252 PDB ID: 2W8L

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	PP_DA6DA7:DT12DT13_TT	-0.276	-0.657	3.317	-1.473	6.711	32.853	-2.236	0.238	3.135	11.706	2.57	33.544
1	7	PP_DA7DG8:DC11DT12_TT	-0.05	-0.084	2.991	-2.576	4.632	33.064	-0.844	-0.301	2.948	8.074	4.491	33.475
1	10	PP_DA10DT11:DA8DT9_TT	0.199	-0.893	3.094	-2.149	7.959	25.361	-3.818	-0.939	2.669	17.546	4.738	26.647
1	1	PP_DG1DG2:DC17DC18_TT	0.648	-0.12	3.193	0.897	8.702	30.891	-1.742	-1.015	3.064	15.94	-1.644	32.077
1	2	PP_DG2DG3:DC16DC17_TT	-1.264	-0.205	3.286	-4.795	3.201	31.783	-0.953	1.397	3.399	5.785	8.667	32.288
1	3	PP_DG3DG4:DC15DC16_TT	0.785	0.121	3.274	0.404	7.155	35.098	-0.84	-1.218	3.244	11.715	-0.661	35.8
1	4	PP_DG4DG5:DC14DC15_TT	0.121	-0.689	3.2	-2.433	6.128	28.499	-2.636	-0.743	2.969	12.241	4.86	29.237
1	5	PP_DG5DA6:DT13DC14_TT	-0.483	-0.23	3.535	4.074	5.605	33.566	-1.332	1.504	3.374	9.579	-6.963	34.254
1	8	PP_DG8DG9:DC10DC11_TT	0.234	-0.685	3.626	1.25	0.669	31.991	-1.376	-0.175	3.618	1.213	-2.266	32.021
1	9	PP_DG9DA10:DT9DC10_TT	-0.53	-0.58	3.336	2.576	-0.81	38.384	-0.778	1.13	3.306	-1.23	-3.912	38.475
1	11	PP_DT11DT12:DA7DA8_TT	1.183	0.348	3.474	3.337	-5.47	39.483	1.181	-1.32	3.481	-8.032	-4.901	39.979
1	12	PP_DT12DC13:DG6DA7_TT	-0.743	-0.29	2.819	8.659	13.895	20.077	-3.732	3.584	1.796	33.55	-20.909	25.853

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.