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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0252
PDB ID:
2W8L
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
PP_DA6DA7:DT12DT13_TT
-0.276
-0.657
3.317
-1.473
6.711
32.853
-2.236
0.238
3.135
11.706
2.57
33.544
1
7
PP_DA7DG8:DC11DT12_TT
-0.05
-0.084
2.991
-2.576
4.632
33.064
-0.844
-0.301
2.948
8.074
4.491
33.475
1
10
PP_DA10DT11:DA8DT9_TT
0.199
-0.893
3.094
-2.149
7.959
25.361
-3.818
-0.939
2.669
17.546
4.738
26.647
1
1
PP_DG1DG2:DC17DC18_TT
0.648
-0.12
3.193
0.897
8.702
30.891
-1.742
-1.015
3.064
15.94
-1.644
32.077
1
2
PP_DG2DG3:DC16DC17_TT
-1.264
-0.205
3.286
-4.795
3.201
31.783
-0.953
1.397
3.399
5.785
8.667
32.288
1
3
PP_DG3DG4:DC15DC16_TT
0.785
0.121
3.274
0.404
7.155
35.098
-0.84
-1.218
3.244
11.715
-0.661
35.8
1
4
PP_DG4DG5:DC14DC15_TT
0.121
-0.689
3.2
-2.433
6.128
28.499
-2.636
-0.743
2.969
12.241
4.86
29.237
1
5
PP_DG5DA6:DT13DC14_TT
-0.483
-0.23
3.535
4.074
5.605
33.566
-1.332
1.504
3.374
9.579
-6.963
34.254
1
8
PP_DG8DG9:DC10DC11_TT
0.234
-0.685
3.626
1.25
0.669
31.991
-1.376
-0.175
3.618
1.213
-2.266
32.021
1
9
PP_DG9DA10:DT9DC10_TT
-0.53
-0.58
3.336
2.576
-0.81
38.384
-0.778
1.13
3.306
-1.23
-3.912
38.475
1
11
PP_DT11DT12:DA7DA8_TT
1.183
0.348
3.474
3.337
-5.47
39.483
1.181
-1.32
3.481
-8.032
-4.901
39.979
1
12
PP_DT12DC13:DG6DA7_TT
-0.743
-0.29
2.819
8.659
13.895
20.077
-3.732
3.584
1.796
33.55
-20.909
25.853
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.