A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA0341  PDB ID: 2W9B 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16C_DA6:DT13_E-0.0310.0250.093-3.8-8.365-3.757
17C_DA7:DT12_E0.232-0.150.3271.967-13.939-6.342
110C_DA10:DT9_E0.0740.049-0.099-10.016-17.3532.005
112C_DC13:DG6_E-0.42-0.061-0.2695.502-9.199-1.114
11C_DG1:DC18_E-0.284-0.453-0.320.724-4.868-3.929
12C_DG2:DC17_E0.723-0.232-0.402-5.379-15.1471.479
13C_DG3:DC16_E0.829-0.199-0.304-1.116-8.6653.688
14C_DG4:DC15_E-0.0130.3620.713.174-8.8490.476
15C_DG5:DC14_E0.7150.0670.6791.861-7.29916.822
18C_DG8:DC11_E-0.755-0.359-0.444-2.4161.427-1.007
19C_DG9:DC10_E-0.407-0.44-0.311-2.905-6.753-1.526
113C_DOC14:O2G5_E3.5660.744-0.33515.705-7.21927.541
111C_DT11:DA8_E0.2260.041-0.017-10.232-11.286-2.717
119D_DA6:DT13_F-0.7170.6230.283-5.6082.9427.054
120D_DA7:DT12_F-0.3650.2740.039-0.755-12.6954.058
123D_DA10:DT9_F0.5140.028-0.552-13.025-13.314-5.428
126D_DC13:DG6_F0.5250.577-0.464-0.014.52111.477
114D_DG1:DC18_F-0.0170.2380.7095.853-4.089-0.044
115D_DG2:DC17_F0.675-0.435-0.447-2.987-3.221-7.163
116D_DG3:DC16_F1.1620.3560.72810.041-10.5927.213
117D_DG4:DC15_F0.227-0.4360.7471.94-3.693-6.055
118D_DG5:DC14_F1.8670.1580.291-1.958-0.5066.707
121D_DG8:DC11_F-1.58-0.3630.2151.745-5.1661.067
122D_DG9:DC10_F0.3050.0630.169-2.104-15.780.714
127D_DOC14:O2G5_F2.5711.224-1.22322.21712.53327.789
124D_DT11:DA8_F0.5030.113-0.339-1.899-7.053-7.387
125D_DT12:DA7_F-0.8930.545-0.76110.448-0.5110.023

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.