2W9B: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: NA0341 PDB ID: 2W9B

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	CC_DA6DA7:DT12DT13_EE	-0.359	-0.617	3.222	-3.436	1.51	34.381	-1.269	0.08	3.213	2.545	5.792	34.579
1	7	CC_DA7DG8:DC11DT12_EE	0.713	-0.506	3.559	3.182	1.841	32.404	-1.251	-0.665	3.577	3.285	-5.679	32.606
1	10	CC_DA10DT11:DA8DT9_EE	-0.309	-0.597	3.389	0.883	-1.827	33.595	-0.722	0.683	3.407	-3.158	-1.526	33.654
1	12	CC_DC13DOC14:O2G5DG6_EE	1.086	0.814	3.138	3.836	11.324	41.507	-0.015	-1.098	3.322	15.593	-5.282	43.122
1	1	CC_DG1DG2:DC17DC18_EE	1.02	-0.025	3.75	3.176	0.378	36.702	-0.099	-1.115	3.821	0.599	-5.031	36.836
1	2	CC_DG2DG3:DC16DC17_EE	-1.049	0.604	3.348	-4.194	3.247	35.583	0.492	1.072	3.485	5.277	6.817	35.963
1	3	CC_DG3DG4:DC15DC16_EE	0.538	-0.494	2.955	-3.156	6.793	24.202	-2.848	-2.027	2.63	15.726	7.307	25.318
1	4	CC_DG4DG5:DC14DC15_EE	1.134	-0.477	3.252	1.215	8.122	32.698	-2.125	-1.763	3.087	14.151	-2.117	33.686
1	5	CC_DG5DA6:DT13DC14_EE	-1.044	-0.108	3.222	6.573	-0.468	34.835	-0.112	2.639	2.983	-0.773	-10.859	35.434
1	8	CC_DG8DG9:DC10DC11_EE	-0.373	-0.076	3.602	-3.621	-2.716	35.368	0.313	0.027	3.617	-4.447	5.93	35.647
1	9	CC_DG9DA10:DT9DC10_EE	0.257	-0.256	3.6	1.83	-8.8	40.653	0.676	-0.147	3.585	-12.482	-2.595	41.594
1	11	CC_DT11DC13:DG6DA8_EE	-0.091	-0.493	6.501	3.562	0.392	59.014	-0.54	0.454	6.483	0.398	-3.612	59.113
1	18	DD_DA6DA7:DT12DT13_FF	-0.743	0.098	3.395	2.154	-0.491	35.025	0.239	1.565	3.343	-0.814	-3.575	35.093
1	19	DD_DA7DG8:DC11DT12_FF	-0.184	-0.111	3.315	-1.561	1.421	28.026	-0.568	0.007	3.31	2.93	3.219	28.103
1	22	DD_DA10DT11:DA8DT9_FF	-0.199	-0.955	3.099	-1.36	-2.549	28.567	-1.375	0.107	3.176	-5.148	2.747	28.71
1	25	DD_DC13DOC14:O2G5DG6_FF	0.706	0.58	3.04	7.289	6.903	33.007	-0.063	-0.092	3.173	11.814	-12.475	34.46
1	13	DD_DG1DG2:DC17DC18_FF	0.86	-0.062	3.892	13.384	0.578	35.078	-0.19	0.839	3.947	0.919	-21.271	37.474
1	14	DD_DG2DG3:DC16DC17_FF	-0.684	0.0	2.867	-7.075	5.443	34.235	-0.722	0.188	2.912	9.057	11.772	35.346
1	15	DD_DG3DG4:DC15DC16_FF	0.109	-1.273	3.214	-1.491	15.147	26.442	-5.104	-0.472	2.172	30.148	2.967	30.442
1	16	DD_DG4DG5:DC14DC15_FF	0.668	-0.179	3.33	3.65	-1.862	38.083	-0.033	-0.548	3.382	-2.843	-5.574	38.294
1	17	DD_DG5DA6:DT13DC14_FF	-0.236	-0.186	3.184	-0.858	3.923	27.199	-1.327	0.292	3.132	8.285	1.812	27.489
1	20	DD_DG8DG9:DC10DC11_FF	-0.005	-0.084	3.494	-0.843	-3.726	45.103	0.246	-0.073	3.49	-4.847	1.096	45.256
1	21	DD_DG9DA10:DT9DC10_FF	-0.424	-0.455	3.613	2.936	-4.559	40.989	-0.103	0.949	3.603	-6.476	-4.17	41.331
1	23	DD_DT11DT12:DA7DA8_FF	0.043	-0.107	3.186	4.545	-11.268	26.446	2.223	0.898	2.952	-23.14	-9.334	29.059
1	24	DD_DT12DC13:DG6DA7_FF	1.345	-0.52	3.49	2.983	14.934	35.778	-2.713	-1.64	3.135	23.064	-4.607	38.786

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.