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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA0341
PDB ID:
2W9B
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
CC_DA6DA7:DT12DT13_EE
-0.359
-0.617
3.222
-3.436
1.51
34.381
-1.269
0.08
3.213
2.545
5.792
34.579
1
7
CC_DA7DG8:DC11DT12_EE
0.713
-0.506
3.559
3.182
1.841
32.404
-1.251
-0.665
3.577
3.285
-5.679
32.606
1
10
CC_DA10DT11:DA8DT9_EE
-0.309
-0.597
3.389
0.883
-1.827
33.595
-0.722
0.683
3.407
-3.158
-1.526
33.654
1
12
CC_DC13DOC14:O2G5DG6_EE
1.086
0.814
3.138
3.836
11.324
41.507
-0.015
-1.098
3.322
15.593
-5.282
43.122
1
1
CC_DG1DG2:DC17DC18_EE
1.02
-0.025
3.75
3.176
0.378
36.702
-0.099
-1.115
3.821
0.599
-5.031
36.836
1
2
CC_DG2DG3:DC16DC17_EE
-1.049
0.604
3.348
-4.194
3.247
35.583
0.492
1.072
3.485
5.277
6.817
35.963
1
3
CC_DG3DG4:DC15DC16_EE
0.538
-0.494
2.955
-3.156
6.793
24.202
-2.848
-2.027
2.63
15.726
7.307
25.318
1
4
CC_DG4DG5:DC14DC15_EE
1.134
-0.477
3.252
1.215
8.122
32.698
-2.125
-1.763
3.087
14.151
-2.117
33.686
1
5
CC_DG5DA6:DT13DC14_EE
-1.044
-0.108
3.222
6.573
-0.468
34.835
-0.112
2.639
2.983
-0.773
-10.859
35.434
1
8
CC_DG8DG9:DC10DC11_EE
-0.373
-0.076
3.602
-3.621
-2.716
35.368
0.313
0.027
3.617
-4.447
5.93
35.647
1
9
CC_DG9DA10:DT9DC10_EE
0.257
-0.256
3.6
1.83
-8.8
40.653
0.676
-0.147
3.585
-12.482
-2.595
41.594
1
11
CC_DT11DC13:DG6DA8_EE
-0.091
-0.493
6.501
3.562
0.392
59.014
-0.54
0.454
6.483
0.398
-3.612
59.113
1
18
DD_DA6DA7:DT12DT13_FF
-0.743
0.098
3.395
2.154
-0.491
35.025
0.239
1.565
3.343
-0.814
-3.575
35.093
1
19
DD_DA7DG8:DC11DT12_FF
-0.184
-0.111
3.315
-1.561
1.421
28.026
-0.568
0.007
3.31
2.93
3.219
28.103
1
22
DD_DA10DT11:DA8DT9_FF
-0.199
-0.955
3.099
-1.36
-2.549
28.567
-1.375
0.107
3.176
-5.148
2.747
28.71
1
25
DD_DC13DOC14:O2G5DG6_FF
0.706
0.58
3.04
7.289
6.903
33.007
-0.063
-0.092
3.173
11.814
-12.475
34.46
1
13
DD_DG1DG2:DC17DC18_FF
0.86
-0.062
3.892
13.384
0.578
35.078
-0.19
0.839
3.947
0.919
-21.271
37.474
1
14
DD_DG2DG3:DC16DC17_FF
-0.684
0.0
2.867
-7.075
5.443
34.235
-0.722
0.188
2.912
9.057
11.772
35.346
1
15
DD_DG3DG4:DC15DC16_FF
0.109
-1.273
3.214
-1.491
15.147
26.442
-5.104
-0.472
2.172
30.148
2.967
30.442
1
16
DD_DG4DG5:DC14DC15_FF
0.668
-0.179
3.33
3.65
-1.862
38.083
-0.033
-0.548
3.382
-2.843
-5.574
38.294
1
17
DD_DG5DA6:DT13DC14_FF
-0.236
-0.186
3.184
-0.858
3.923
27.199
-1.327
0.292
3.132
8.285
1.812
27.489
1
20
DD_DG8DG9:DC10DC11_FF
-0.005
-0.084
3.494
-0.843
-3.726
45.103
0.246
-0.073
3.49
-4.847
1.096
45.256
1
21
DD_DG9DA10:DT9DC10_FF
-0.424
-0.455
3.613
2.936
-4.559
40.989
-0.103
0.949
3.603
-6.476
-4.17
41.331
1
23
DD_DT11DT12:DA7DA8_FF
0.043
-0.107
3.186
4.545
-11.268
26.446
2.223
0.898
2.952
-23.14
-9.334
29.059
1
24
DD_DT12DC13:DG6DA7_FF
1.345
-0.52
3.49
2.983
14.934
35.778
-2.713
-1.64
3.135
23.064
-4.607
38.786
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.