A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA0342  PDB ID: 2W9C 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16C_DA6:DT13_E0.242-0.135-0.299-8.785-10.1540.396
17C_DA7:DT12_E-0.8970.08-0.404-4.603-8.523.888
110C_DA10:DT9_E-1.0670.436-0.402-16.169-13.39515.162
11C_DG1:DC18_E0.217-0.023-0.2473.955-11.755-1.19
12C_DG2:DC17_E1.23-0.073-0.603-3.711-1.718-7.655
13C_DG3:DC16_E0.395-0.414-0.2443.809-12.002-5.65
14C_DG4:DC15_E-0.606-0.5070.02-3.113-2.286-3.032
15C_DG5:DC14_E0.93-0.3-0.348-10.2221.2043.42
18C_DG8:DC11_E-0.531-0.06-0.1274.21-1.682-1.771
19C_DG9:DC10_E-0.1910.2140.045-3.47-15.0988.93
113C_DOC13:DG6_E0.1110.065-0.347-3.878-3.3825.139
111C_DT11:DA8_E-0.8010.114-0.302-5.73-0.376-11.322
112C_DT12:DA7_E-0.4920.163-0.091-2.9581.635-12.153
119D_DA6:DT13_F-1.2060.306-0.2090.086-12.1210.275
120D_DA7:DT12_F-1.5960.2310.4333.894-26.17619.301
123D_DA10:DT9_F-0.393-0.222-0.014-12.077-15.722-2.924
114D_DG1:DC18_F-0.0040.184-0.5390.672-14.3695.014
115D_DG2:DC17_F0.2050.910.73315.6411.08112.008
116D_DG3:DC16_F0.589-0.3290.93412.791-7.9463.622
117D_DG4:DC15_F0.5230.3870.5163.19-5.53713.184
118D_DG5:DC14_F-0.199-0.0990.40811.5771.149-1.477
121D_DG8:DC11_F-0.7970.2050.77516.2661.9543.659
122D_DG9:DC10_F-0.635-0.1431.18916.252-27.8712.724
126D_DOC13:DG6_F-0.620.161-0.157-2.4749.1496.72
124D_DT11:DA8_F-0.8570.2210.606-9.71-15.411.034
125D_DT12:DA7_F-0.9090.3240.002-3.465-6.1482.994

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.