2W9C: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

Search for released structures

NDB ID: NA0342 PDB ID: 2W9C

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	CC_DA6DA7:DT12DT13_EE	-0.073	-0.82	3.173	1.467	1.624	24.089	-2.453	0.623	3.102	3.882	-3.506	24.186
1	7	CC_DA7DG8:DC11DT12_EE	-0.202	0.505	3.188	-4.512	2.856	35.178	0.416	-0.317	3.218	4.691	7.413	35.568
1	10	CC_DA10DT11:DA8DT9_EE	-1.282	-0.182	3.28	-4.237	-9.128	30.682	1.358	1.525	3.339	-16.695	7.75	32.253
1	1	CC_DG1DG2:DC17DC18_EE	0.22	-0.183	3.638	2.77	7.762	35.585	-1.483	0.074	3.529	12.494	-4.459	36.497
1	2	CC_DG2DG3:DC16DC17_EE	-0.919	0.619	3.144	-8.07	0.949	28.501	1.009	0.086	3.293	1.879	15.985	29.614
1	3	CC_DG3DG4:DC15DC16_EE	0.325	-0.259	3.401	-0.227	6.8	31.911	-1.682	-0.62	3.276	12.196	0.406	32.61
1	4	CC_DG4DG5:DC14DC15_EE	0.936	-0.881	3.493	4.728	6.797	31.328	-2.854	-0.793	3.335	12.32	-8.57	32.377
1	5	CC_DG5DA6:DT13DC14_EE	-0.14	-0.068	3.213	-1.185	7.823	35.651	-1.171	0.063	3.132	12.587	1.907	36.491
1	8	CC_DG8DG9:DC10DC11_EE	0.335	0.0	3.648	-3.506	-0.648	37.079	0.096	-1.042	3.602	-1.017	5.498	37.244
1	9	CC_DG9DA10:DT9DC10_EE	0.153	-0.149	3.749	3.905	-5.048	40.817	0.414	0.266	3.739	-7.184	-5.557	41.292
1	11	CC_DT11DT12:DA7DA8_EE	-0.205	-1.219	3.348	-1.839	1.79	31.756	-2.552	0.033	3.282	3.264	3.355	31.856
1	12	CC_DT12DOC13:DG6DA7_EE	1.59	-0.435	3.555	4.879	6.299	31.1	-2.047	-1.903	3.601	11.513	-8.918	32.08
1	18	DD_DA6DA7:DT12DT13_FF	-0.092	0.241	3.205	-5.289	2.233	30.005	0.021	-0.86	3.183	4.264	10.099	30.537
1	19	DD_DA7DG8:DC11DT12_FF	-0.544	0.087	3.016	-5.192	-2.094	37.995	0.375	0.223	3.053	-3.196	7.922	38.39
1	22	DD_DA10DT11:DA8DT9_FF	-0.015	-0.537	3.226	-6.068	-3.254	30.065	-0.378	-1.15	3.207	-6.172	11.509	30.825
1	13	DD_DG1DG2:DC17DC18_FF	1.142	-0.09	2.979	-6.818	-0.78	26.716	-0.024	-3.843	2.614	-1.654	14.454	27.567
1	14	DD_DG2DG3:DC16DC17_FF	-1.385	0.225	3.466	-3.346	-0.32	39.503	0.372	1.622	3.565	-0.473	4.94	39.64
1	15	DD_DG3DG4:DC15DC16_FF	0.716	-0.536	3.564	6.562	10.61	33.909	-2.502	-0.144	3.331	17.474	-10.807	36.068
1	16	DD_DG4DG5:DC14DC15_FF	-1.19	-1.139	2.833	-4.487	4.169	23.872	-3.782	1.592	2.77	9.872	10.625	24.634
1	17	DD_DG5DA6:DT13DC14_FF	-0.251	-0.769	3.473	3.637	8.402	28.99	-3.199	1.228	3.081	16.278	-7.046	30.372
1	20	DD_DG8DG9:DC10DC11_FF	-0.225	0.04	3.592	-3.936	-4.056	34.625	0.737	-0.276	3.568	-6.759	6.559	35.07
1	21	DD_DG9DA10:DT9DC10_FF	-0.525	-0.946	4.113	4.925	-7.444	43.193	-0.369	1.29	4.132	-9.985	-6.606	44.062
1	23	DD_DT11DT12:DA7DA8_FF	-0.485	-0.996	3.273	0.608	-6.306	29.918	-0.602	1.045	3.397	-12.044	-1.161	30.567
1	24	DD_DT12DOC13:DG6DA7_FF	1.103	-0.898	3.545	-0.943	6.986	27.226	-3.564	-2.503	3.181	14.534	1.961	28.107

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.