A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: NA2633  PDB ID: 2YPF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13B_DA1:DT-1_C0.267-0.4220.048-10.282-6.067-2.601
15B_DA3:DT-3_C0.471-0.383-0.268-1.892-9.168-4.958
17B_DA5:DT-5_C0.051-0.286-0.041-1.101-12.9281.179
18B_DA6:DT-6_C-0.003-0.4480.40910.893-17.4392.779
19B_DA7:DT-7_C0.414-0.227-0.03710.881-15.409-3.047
113B_DA11:DT-11_C-0.0270.014-0.425-13.005-14.797-1.016
114B_DA12:DT-12_C0.343-0.088-0.121-6.804-14.1351.928
121B_DA19:DT-19_C2.9430.301-0.474-10.749-15.038-48.079
110B_DC8:DG-8_C0.042-0.2560.2192.436-8.1992.588
111B_DC9:DG-9_C-0.205-0.129-0.319-0.46-6.341-2.101
115B_DC13:DG-13_C0.203-0.2180.189-2.872-8.841-3.061
116B_DC14:DG-14_C-0.3280.0790.16-8.838-6.9470.461
117B_DC15:DG-15_C-0.346-0.0860.325-9.706-8.1840.588
119B_DC17:DG-17_C0.399-0.4360.215-0.197-0.919-6.873
11B_DT-1:DA1_C-0.455-0.031-0.3382.211-16.4334.265
12B_DT0:DA0_C-0.6-0.313-0.031.435-14.7234.323
14B_DT2:DA-2_C-0.814-0.173-0.124-5.694-10.6173.33
16B_DT4:DA-4_C-0.92-0.4740.0981.201-12.503-1.647
112B_DT10:DA-10_C-0.757-0.345-0.038-6.934-9.089-3.811
118B_DT16:DA-16_C0.254-0.4390.021-4.613-13.707-9.401
120B_DT18:DA-18_C0.394-0.42-0.724.162-12.81912.922

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.