A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
Search for released structures

NDB ID: NA2633  PDB ID: 2YPF 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13BB_DA1DT2:DA-2DT-1_CC-0.103-1.2113.1330.9867.39822.375-5.1920.5482.59618.418-2.45523.572
15BB_DA3DT4:DA-4DT-3_CC0.245-1.7383.209-1.9141.78623.54-4.803-1.2063.0414.364.67323.683
17BB_DA5DA6:DT-6DT-5_CC0.177-0.6932.992-3.233-6.00532.04-0.264-0.8333.037-10.7275.77632.739
18BB_DA6DA7:DT-7DT-6_CC-0.035-1.1273.3293.937-2.2333.137-1.580.733.369-3.887-6.86333.435
19BB_DA7DC8:DG-8DT-7_CC0.55-1.5593.421-1.3163.32332.234-3.386-1.2213.2245.9622.36132.426
113BB_DA11DA12:DT-12DT-11_CC0.305-0.723.1810.3230.8733.88-1.37-0.4733.1651.493-0.55433.892
114BB_DA12DC13:DG-13DT-12_CC0.136-1.0473.261-1.256-0.72433.631-1.69-0.4393.275-1.252.16933.662
110BB_DC8DC9:DG-9DG-8_CC-0.14-1.4743.4925.958-2.98528.771-2.2031.6533.524-5.907-11.79229.516
111BB_DC9DT10:DA-10DG-9_CC-0.069-1.3023.4950.5682.98929.774-3.170.2573.3495.798-1.10329.925
115BB_DC13DC14:DG-14DG-13_CC0.116-0.9443.3534.856.26229.286-3.0660.7553.06912.109-9.37830.316
116BB_DC14DC15:DG-15DG-14_CC-0.353-0.7333.307-1.8292.93730.33-1.9790.3063.2395.593.48230.522
117BB_DC15DT16:DA-16DG-15_CC-0.616-0.5153.1872.4720.12937.681-0.8111.263.140.2-3.82337.759
119BB_DC17DT18:DA-18DG-17_CC0.769-0.353.23910.648-0.26436.195-0.5070.2253.328-0.414-16.69937.679
11BB_DT-1DT0:DA0DA1_CC0.586-0.2643.234-1.7291.48738.193-0.586-1.1083.1932.272.6438.259
12BB_DT0DA1:DT-1DA0_CC0.0210.0553.5843.383-2.6840.6110.4010.3773.564-3.848-4.85740.83
14BB_DT2DA3:DT-3DA-2_CC-0.32-0.3483.196-1.3785.30837.794-1.1830.323.138.1422.11338.176
16BB_DT4DA5:DT-5DA-4_CC0.023-0.8253.4031.8152.76835.608-1.7560.2333.3294.515-2.9635.757
112BB_DT10DA11:DT-11DA-10_CC0.218-0.7333.6344.913-3.74135.974-0.5880.4193.686-6.002-7.88436.483
118BB_DT16DC17:DG-17DA-16_CC-0.01-0.6043.26-1.3220.36933.971-1.092-0.1933.2520.632.26233.998
120BB_DT18DA19:DT-19DA-18_CC-1.951-0.2344.1110.0816.24243.354-1.0592.6264.0388.397-0.10943.78

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.