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NDB ID: PR0171  PDB ID: 2AKE 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2AKE|1|B|A|142AKE|1|B|A|21cWS
2AKE|1|B|A|142AKE|1|B|G|22s55
2AKE|1|B|A|14||||7_5562AKE|1|B|A|21||||7_556cWS
2AKE|1|B|A|14||||7_5562AKE|1|B|G|22||||7_556s55
2AKE|1|B|A|22AKE|1|B|A|20BPh
2AKE|1|B|A|22AKE|1|B|C|3s35
2AKE|1|B|A|22AKE|1|B|C|72ns55
2AKE|1|B|A|22AKE|1|B|G|1s53
2AKE|1|B|A|22AKE|1|B|U|71cWW
2AKE|1|B|A|212AKE|1|B|A|14cSW
2AKE|1|B|A|212AKE|1|B|A|21n0BP
2AKE|1|B|A|212AKE|1|B|G|9ns35
2AKE|1|B|A|212AKE|1|B|U|48n6BP
2AKE|1|B|A|21||||7_5562AKE|1|B|A|14||||7_556cSW
2AKE|1|B|A|21||||7_5562AKE|1|B|A|21||||7_556n0BP
2AKE|1|B|A|21||||7_5562AKE|1|B|G|9||||7_556ns35
2AKE|1|B|A|21||||7_5562AKE|1|B|U|48||||7_556n6BP
2AKE|1|B|A|2||||7_5562AKE|1|B|A|2||||7_5560BPh
2AKE|1|B|A|2||||7_5562AKE|1|B|C|3||||7_556s35
2AKE|1|B|A|2||||7_5562AKE|1|B|C|72||||7_556ns55
2AKE|1|B|A|2||||7_5562AKE|1|B|G|1||||7_556s53
2AKE|1|B|A|2||||7_5562AKE|1|B|U|71||||7_556cWW
2AKE|1|B|A|312AKE|1|B|A|310BPh
2AKE|1|B|A|312AKE|1|B|C|32s35
2AKE|1|B|A|312AKE|1|B|G|30s53
2AKE|1|B|A|312AKE|1|B|U|39cWW
2AKE|1|B|A|31||||7_5562AKE|1|B|A|31||||7_5560BPh
2AKE|1|B|A|31||||7_5562AKE|1|B|C|32||||7_556s35
2AKE|1|B|A|31||||7_5562AKE|1|B|G|30||||7_556s53
2AKE|1|B|A|31||||7_5562AKE|1|B|U|39||||7_556cWW
2AKE|1|B|A|362AKE|1|B|A|36n0BP
2AKE|1|B|A|362AKE|1|B|C|35s53
2AKE|1|B|A|362AKE|1|B|G|37s35
2AKE|1|B|A|36||||7_5562AKE|1|B|A|36||||7_556n0BP
2AKE|1|B|A|36||||7_5562AKE|1|B|C|35||||7_556s53
2AKE|1|B|A|36||||7_5562AKE|1|B|G|37||||7_556s35
2AKE|1|B|A|382AKE|1|B|A|38n2BP
2AKE|1|B|A|382AKE|1|B|C|32ntWW
2AKE|1|B|A|382AKE|1|B|G|37s33
2AKE|1|B|A|382AKE|1|B|U|39s55
2AKE|1|B|A|38||||7_5562AKE|1|B|A|38||||7_556n2BP
2AKE|1|B|A|38||||7_5562AKE|1|B|C|32||||7_556ntWW
2AKE|1|B|A|38||||7_5562AKE|1|B|G|37||||7_556s33
2AKE|1|B|A|38||||7_5562AKE|1|B|U|39||||7_556s55
2AKE|1|B|A|412AKE|1|B|A|410BPh
2AKE|1|B|A|412AKE|1|B|C|40s53
2AKE|1|B|A|412AKE|1|B|G|30s55
2AKE|1|B|A|412AKE|1|B|G|42s35
2AKE|1|B|A|412AKE|1|B|U|29cWW
2AKE|1|B|A|41||||7_5562AKE|1|B|A|41||||7_5560BPh
2AKE|1|B|A|41||||7_5562AKE|1|B|C|40||||7_556s53
2AKE|1|B|A|41||||7_5562AKE|1|B|G|30||||7_556s55
2AKE|1|B|A|41||||7_5562AKE|1|B|G|42||||7_556s35
2AKE|1|B|A|41||||7_5562AKE|1|B|U|29||||7_556cWW
2AKE|1|B|A|432AKE|1|B|A|430BPh
2AKE|1|B|A|432AKE|1|B|A|44s35
2AKE|1|B|A|432AKE|1|B|G|42s53
2AKE|1|B|A|432AKE|1|B|U|27ncWW
2AKE|1|B|A|43||||7_5562AKE|1|B|A|43||||7_5560BPh
2AKE|1|B|A|43||||7_5562AKE|1|B|A|44||||7_556s35
2AKE|1|B|A|43||||7_5562AKE|1|B|G|42||||7_556s53
2AKE|1|B|A|43||||7_5562AKE|1|B|U|27||||7_556ncWW
2AKE|1|B|A|442AKE|1|B|A|43s53
2AKE|1|B|A|442AKE|1|B|A|440BPh
2AKE|1|B|A|442AKE|1|B|G|26cWW
2AKE|1|B|A|442AKE|1|B|G|45
2AKE|1|B|A|44||||7_5562AKE|1|B|A|43||||7_556s53
2AKE|1|B|A|44||||7_5562AKE|1|B|A|44||||7_5560BPh
2AKE|1|B|A|44||||7_5562AKE|1|B|G|26||||7_556cWW
2AKE|1|B|A|44||||7_5562AKE|1|B|G|45||||7_556
2AKE|1|B|A|582AKE|1|B|A|58n0BP
2AKE|1|B|A|582AKE|1|B|C|61s35
2AKE|1|B|A|582AKE|1|B|U|54tHW
2AKE|1|B|A|582AKE|1|B|U|60
2AKE|1|B|A|58||||7_5562AKE|1|B|A|58||||7_556n0BP
2AKE|1|B|A|58||||7_5562AKE|1|B|C|61||||7_556s35
2AKE|1|B|A|58||||7_5562AKE|1|B|U|54||||7_556tHW
2AKE|1|B|A|58||||7_5562AKE|1|B|U|60||||7_556
2AKE|1|B|A|592AKE|1|B|A|15
2AKE|1|B|A|592AKE|1|B|A|59n0BP
2AKE|1|B|A|592AKE|1|B|U|166BPh
2AKE|1|B|A|592AKE|1|B|U|60s35
2AKE|1|B|A|59||||7_5562AKE|1|B|A|15||||7_556
2AKE|1|B|A|59||||7_5562AKE|1|B|A|59||||7_556n0BP
2AKE|1|B|A|59||||7_5562AKE|1|B|U|16||||7_5566BPh
2AKE|1|B|A|59||||7_5562AKE|1|B|U|60||||7_556s35
2AKE|1|B|A|622AKE|1|B|A|620BPh
2AKE|1|B|A|622AKE|1|B|C|61
2AKE|1|B|A|622AKE|1|B|C|63s35
2AKE|1|B|A|622AKE|1|B|G|53s55
2AKE|1|B|A|622AKE|1|B|U|52cWW
2AKE|1|B|A|62||||7_5562AKE|1|B|A|62||||7_5560BPh
2AKE|1|B|A|62||||7_5562AKE|1|B|C|61||||7_556
2AKE|1|B|A|62||||7_5562AKE|1|B|C|63||||7_556s35
2AKE|1|B|A|62||||7_5562AKE|1|B|G|53||||7_556s55
2AKE|1|B|A|62||||7_5562AKE|1|B|U|52||||7_556cWW
2AKE|1|B|A|732AKE|1|B|A|730BPh
2AKE|1|B|A|73||||7_5562AKE|1|B|A|73||||7_5560BPh
2AKE|1|B|C|112AKE|1|B|C|110BPh
2AKE|1|B|C|112AKE|1|B|G|10s53n9BP
2AKE|1|B|C|112AKE|1|B|G|12s35
2AKE|1|B|C|112AKE|1|B|G|24cWW
2AKE|1|B|C|11||||7_5562AKE|1|B|C|11||||7_5560BPh
2AKE|1|B|C|11||||7_5562AKE|1|B|G|10||||7_556s53n9BP
2AKE|1|B|C|11||||7_5562AKE|1|B|G|12||||7_556s35
2AKE|1|B|C|11||||7_5562AKE|1|B|G|24||||7_556cWW
2AKE|1|B|C|132AKE|1|B|G|12s53
2AKE|1|B|C|132AKE|1|B|G|22cWW
2AKE|1|B|C|132AKE|1|B|G|9ntWH
2AKE|1|B|C|132AKE|1|B|U|8
2AKE|1|B|C|13||||7_5562AKE|1|B|G|12||||7_556s53
2AKE|1|B|C|13||||7_5562AKE|1|B|G|22||||7_556cWW
2AKE|1|B|C|13||||7_5562AKE|1|B|G|9||||7_556ntWH
2AKE|1|B|C|13||||7_5562AKE|1|B|U|8||||7_556
2AKE|1|B|C|232AKE|1|B|C|230BPh
2AKE|1|B|C|232AKE|1|B|G|22ns53
2AKE|1|B|C|232AKE|1|B|G|24ncWH
2AKE|1|B|C|23||||7_5562AKE|1|B|C|23||||7_5560BPh
2AKE|1|B|C|23||||7_5562AKE|1|B|G|22||||7_556ns53
2AKE|1|B|C|23||||7_5562AKE|1|B|G|24||||7_556ncWH
2AKE|1|B|C|252AKE|1|B|C|250BPh
2AKE|1|B|C|252AKE|1|B|G|10cWW
2AKE|1|B|C|252AKE|1|B|G|24s539BPh
2AKE|1|B|C|252AKE|1|B|G|26s35
2AKE|1|B|C|25||||7_5562AKE|1|B|C|25||||7_5560BPh
2AKE|1|B|C|25||||7_5562AKE|1|B|G|10||||7_556cWW
2AKE|1|B|C|25||||7_5562AKE|1|B|G|24||||7_556s539BPh
2AKE|1|B|C|25||||7_5562AKE|1|B|G|26||||7_556s35
2AKE|1|B|C|282AKE|1|B|C|280BPh
2AKE|1|B|C|282AKE|1|B|G|42cWW
2AKE|1|B|C|282AKE|1|B|U|27s53
2AKE|1|B|C|282AKE|1|B|U|29ns35
2AKE|1|B|C|28||||7_5562AKE|1|B|C|28||||7_5560BPh
2AKE|1|B|C|28||||7_5562AKE|1|B|G|42||||7_556cWW
2AKE|1|B|C|28||||7_5562AKE|1|B|U|27||||7_556s53
2AKE|1|B|C|28||||7_5562AKE|1|B|U|29||||7_556ns35
2AKE|1|B|C|32AKE|1|B|A|2s53
2AKE|1|B|C|32AKE|1|B|C|30BPh
2AKE|1|B|C|32AKE|1|B|C|4ns35
2AKE|1|B|C|32AKE|1|B|G|70cWW
2AKE|1|B|C|322AKE|1|B|A|31s53
2AKE|1|B|C|322AKE|1|B|A|38ntWW
2AKE|1|B|C|322AKE|1|B|C|320BPh
2AKE|1|B|C|322AKE|1|B|U|33
2AKE|1|B|C|32||||7_5562AKE|1|B|A|31||||7_556s53
2AKE|1|B|C|32||||7_5562AKE|1|B|A|38||||7_556ntWW
2AKE|1|B|C|32||||7_5562AKE|1|B|C|32||||7_5560BPh
2AKE|1|B|C|32||||7_5562AKE|1|B|U|33||||7_556
2AKE|1|B|C|342AKE|1|B|C|340BPh
2AKE|1|B|C|342AKE|1|B|C|35s35
2AKE|1|B|C|342AKE|1|B|U|33
2AKE|1|B|C|34||||7_5562AKE|1|B|C|34||||7_5560BPh
2AKE|1|B|C|34||||7_5562AKE|1|B|C|35||||7_556s35
2AKE|1|B|C|34||||7_5562AKE|1|B|U|33||||7_556
2AKE|1|B|C|352AKE|1|B|A|36s35
2AKE|1|B|C|352AKE|1|B|C|34s53
2AKE|1|B|C|352AKE|1|B|C|350BPh
2AKE|1|B|C|352AKE|1|B|U|33
2AKE|1|B|C|35||||7_5562AKE|1|B|A|36||||7_556s35
2AKE|1|B|C|35||||7_5562AKE|1|B|C|34||||7_556s53
2AKE|1|B|C|35||||7_5562AKE|1|B|C|35||||7_5560BPh
2AKE|1|B|C|35||||7_5562AKE|1|B|U|33||||7_556
2AKE|1|B|C|3||||7_5562AKE|1|B|A|2||||7_556s53
2AKE|1|B|C|3||||7_5562AKE|1|B|C|3||||7_5560BPh
2AKE|1|B|C|3||||7_5562AKE|1|B|C|4||||7_556ns35
2AKE|1|B|C|3||||7_5562AKE|1|B|G|70||||7_556cWW
2AKE|1|B|C|42AKE|1|B|C|3ns53
2AKE|1|B|C|42AKE|1|B|C|4n0BP
2AKE|1|B|C|42AKE|1|B|G|69cWW
2AKE|1|B|C|42AKE|1|B|G|70s55
2AKE|1|B|C|42AKE|1|B|U|5s35
2AKE|1|B|C|402AKE|1|B|A|41s35
2AKE|1|B|C|402AKE|1|B|C|400BPh
2AKE|1|B|C|402AKE|1|B|G|30cWW
2AKE|1|B|C|402AKE|1|B|U|39s53
2AKE|1|B|C|40||||7_5562AKE|1|B|A|41||||7_556s35
2AKE|1|B|C|40||||7_5562AKE|1|B|C|40||||7_5560BPh
2AKE|1|B|C|40||||7_5562AKE|1|B|G|30||||7_556cWW
2AKE|1|B|C|40||||7_5562AKE|1|B|U|39||||7_556s53
2AKE|1|B|C|4||||7_5562AKE|1|B|C|3||||7_556ns53
2AKE|1|B|C|4||||7_5562AKE|1|B|C|4||||7_556n0BP
2AKE|1|B|C|4||||7_5562AKE|1|B|G|69||||7_556cWW
2AKE|1|B|C|4||||7_5562AKE|1|B|G|70||||7_556s55
2AKE|1|B|C|4||||7_5562AKE|1|B|U|5||||7_556s35
2AKE|1|B|C|502AKE|1|B|C|50n0BP
2AKE|1|B|C|502AKE|1|B|G|49s53
2AKE|1|B|C|502AKE|1|B|G|51s35
2AKE|1|B|C|502AKE|1|B|G|64cWW
2AKE|1|B|C|50||||7_5562AKE|1|B|C|50||||7_556n0BP
2AKE|1|B|C|50||||7_5562AKE|1|B|G|49||||7_556s53
2AKE|1|B|C|50||||7_5562AKE|1|B|G|51||||7_556s35
2AKE|1|B|C|50||||7_5562AKE|1|B|G|64||||7_556cWW
2AKE|1|B|C|562AKE|1|B|C|56n0BP
2AKE|1|B|C|562AKE|1|B|G|57s35
2AKE|1|B|C|56||||7_5562AKE|1|B|C|56||||7_556n0BP
2AKE|1|B|C|56||||7_5562AKE|1|B|G|57||||7_556s35
2AKE|1|B|C|62AKE|1|B|C|60BPh
2AKE|1|B|C|62AKE|1|B|G|67cWW
2AKE|1|B|C|62AKE|1|B|G|68s55
2AKE|1|B|C|62AKE|1|B|G|7s35
2AKE|1|B|C|62AKE|1|B|U|5s53
2AKE|1|B|C|612AKE|1|B|A|58s53
2AKE|1|B|C|612AKE|1|B|C|610BPh
2AKE|1|B|C|612AKE|1|B|G|53cWW
2AKE|1|B|C|612AKE|1|B|U|608BPh
2AKE|1|B|C|61||||7_5562AKE|1|B|A|58||||7_556s53
2AKE|1|B|C|61||||7_5562AKE|1|B|C|61||||7_5560BPh
2AKE|1|B|C|61||||7_5562AKE|1|B|G|53||||7_556cWW
2AKE|1|B|C|61||||7_5562AKE|1|B|U|60||||7_5568BPh
2AKE|1|B|C|632AKE|1|B|A|62s53
2AKE|1|B|C|632AKE|1|B|C|630BPh
2AKE|1|B|C|632AKE|1|B|G|51cWW
2AKE|1|B|C|632AKE|1|B|G|64s35
2AKE|1|B|C|63||||7_5562AKE|1|B|A|62||||7_556s53
2AKE|1|B|C|63||||7_5562AKE|1|B|C|63||||7_5560BPh
2AKE|1|B|C|63||||7_5562AKE|1|B|G|51||||7_556cWW
2AKE|1|B|C|63||||7_5562AKE|1|B|G|64||||7_556s35
2AKE|1|B|C|662AKE|1|B|C|660BPh
2AKE|1|B|C|662AKE|1|B|G|49s55
2AKE|1|B|C|662AKE|1|B|G|67s35
2AKE|1|B|C|662AKE|1|B|G|7cWW
2AKE|1|B|C|662AKE|1|B|U|65s53
2AKE|1|B|C|66||||7_5562AKE|1|B|C|66||||7_5560BPh
2AKE|1|B|C|66||||7_5562AKE|1|B|G|49||||7_556s55
2AKE|1|B|C|66||||7_5562AKE|1|B|G|67||||7_556s35
2AKE|1|B|C|66||||7_5562AKE|1|B|G|7||||7_556cWW
2AKE|1|B|C|66||||7_5562AKE|1|B|U|65||||7_556s53
2AKE|1|B|C|6||||7_5562AKE|1|B|C|6||||7_5560BPh
2AKE|1|B|C|6||||7_5562AKE|1|B|G|67||||7_556cWW
2AKE|1|B|C|6||||7_5562AKE|1|B|G|68||||7_556s55
2AKE|1|B|C|6||||7_5562AKE|1|B|G|7||||7_556s35
2AKE|1|B|C|6||||7_5562AKE|1|B|U|5||||7_556s53
2AKE|1|B|C|722AKE|1|B|A|2ns55
2AKE|1|B|C|722AKE|1|B|C|720BPh
2AKE|1|B|C|722AKE|1|B|G|1cWW
2AKE|1|B|C|722AKE|1|B|U|71s53
2AKE|1|B|C|72||||7_5562AKE|1|B|A|2||||7_556ns55
2AKE|1|B|C|72||||7_5562AKE|1|B|C|72||||7_5560BPh
2AKE|1|B|C|72||||7_5562AKE|1|B|G|1||||7_556cWW
2AKE|1|B|C|72||||7_5562AKE|1|B|U|71||||7_556s53
2AKE|1|B|G|12AKE|1|B|A|2s35
2AKE|1|B|G|12AKE|1|B|C|72cWW
2AKE|1|B|G|102AKE|1|B|C|11s35
2AKE|1|B|G|102AKE|1|B|C|25cWW
2AKE|1|B|G|102AKE|1|B|G|10n0BP
2AKE|1|B|G|102AKE|1|B|G|26s55
2AKE|1|B|G|10||||7_5562AKE|1|B|C|11||||7_556s35
2AKE|1|B|G|10||||7_5562AKE|1|B|C|25||||7_556cWW
2AKE|1|B|G|10||||7_5562AKE|1|B|G|10||||7_556n0BP
2AKE|1|B|G|10||||7_5562AKE|1|B|G|26||||7_556s55
2AKE|1|B|G|122AKE|1|B|C|11s53
2AKE|1|B|G|122AKE|1|B|C|13s35
2AKE|1|B|G|122AKE|1|B|G|120BPh
2AKE|1|B|G|122AKE|1|B|G|22ns33
2AKE|1|B|G|122AKE|1|B|G|24s55
2AKE|1|B|G|122AKE|1|B|U|8
2AKE|1|B|G|12||||7_5562AKE|1|B|C|11||||7_556s53
2AKE|1|B|G|12||||7_5562AKE|1|B|C|13||||7_556s35
2AKE|1|B|G|12||||7_5562AKE|1|B|G|12||||7_5560BPh
2AKE|1|B|G|12||||7_5562AKE|1|B|G|22||||7_556ns33
2AKE|1|B|G|12||||7_5562AKE|1|B|G|24||||7_556s55
2AKE|1|B|G|12||||7_5562AKE|1|B|U|8||||7_556
2AKE|1|B|G|182AKE|1|B|G|18n0BP
2AKE|1|B|G|18||||7_5562AKE|1|B|G|18||||7_556n0BP
2AKE|1|B|G|192AKE|1|B|G|19n0BP
2AKE|1|B|G|19||||7_5562AKE|1|B|G|19||||7_556n0BP
2AKE|1|B|G|1||||7_5562AKE|1|B|A|2||||7_556s35
2AKE|1|B|G|1||||7_5562AKE|1|B|C|72||||7_556cWW
2AKE|1|B|G|222AKE|1|B|A|14s55
2AKE|1|B|G|222AKE|1|B|C|13cWW
2AKE|1|B|G|222AKE|1|B|C|23ns35
2AKE|1|B|G|222AKE|1|B|G|12ns33
2AKE|1|B|G|222AKE|1|B|G|220BPh
2AKE|1|B|G|22||||7_5562AKE|1|B|A|14||||7_556s55
2AKE|1|B|G|22||||7_5562AKE|1|B|C|13||||7_556cWW
2AKE|1|B|G|22||||7_5562AKE|1|B|C|23||||7_556ns35
2AKE|1|B|G|22||||7_5562AKE|1|B|G|12||||7_556ns33
2AKE|1|B|G|22||||7_5562AKE|1|B|G|22||||7_5560BPh
2AKE|1|B|G|242AKE|1|B|C|11cWW
2AKE|1|B|G|242AKE|1|B|C|23ncHW
2AKE|1|B|G|242AKE|1|B|C|25s35
2AKE|1|B|G|242AKE|1|B|G|12s55
2AKE|1|B|G|24||||7_5562AKE|1|B|C|11||||7_556cWW
2AKE|1|B|G|24||||7_5562AKE|1|B|C|23||||7_556ncHW
2AKE|1|B|G|24||||7_5562AKE|1|B|C|25||||7_556s35
2AKE|1|B|G|24||||7_5562AKE|1|B|G|12||||7_556s55
2AKE|1|B|G|262AKE|1|B|A|44cWW
2AKE|1|B|G|262AKE|1|B|C|25s53
2AKE|1|B|G|262AKE|1|B|G|10s55
2AKE|1|B|G|262AKE|1|B|G|26n0BP
2AKE|1|B|G|262AKE|1|B|U|27s35
2AKE|1|B|G|26||||7_5562AKE|1|B|A|44||||7_556cWW
2AKE|1|B|G|26||||7_5562AKE|1|B|C|25||||7_556s53
2AKE|1|B|G|26||||7_5562AKE|1|B|G|10||||7_556s55
2AKE|1|B|G|26||||7_5562AKE|1|B|G|26||||7_556n0BP
2AKE|1|B|G|26||||7_5562AKE|1|B|U|27||||7_556s35
2AKE|1|B|G|302AKE|1|B|A|31s35
2AKE|1|B|G|302AKE|1|B|A|41s55
2AKE|1|B|G|302AKE|1|B|C|40cWW
2AKE|1|B|G|302AKE|1|B|G|300BPh
2AKE|1|B|G|302AKE|1|B|U|29s53
2AKE|1|B|G|30||||7_5562AKE|1|B|A|31||||7_556s35
2AKE|1|B|G|30||||7_5562AKE|1|B|A|41||||7_556s55
2AKE|1|B|G|30||||7_5562AKE|1|B|C|40||||7_556cWW
2AKE|1|B|G|30||||7_5562AKE|1|B|G|30||||7_5560BPh
2AKE|1|B|G|30||||7_5562AKE|1|B|U|29||||7_556s53
2AKE|1|B|G|372AKE|1|B|A|36s53
2AKE|1|B|G|372AKE|1|B|A|38s33
2AKE|1|B|G|372AKE|1|B|G|370BPh
2AKE|1|B|G|37||||7_5562AKE|1|B|A|36||||7_556s53
2AKE|1|B|G|37||||7_5562AKE|1|B|A|38||||7_556s33
2AKE|1|B|G|37||||7_5562AKE|1|B|G|37||||7_5560BPh
2AKE|1|B|G|422AKE|1|B|A|41s53
2AKE|1|B|G|422AKE|1|B|A|43s35
2AKE|1|B|G|422AKE|1|B|C|28cWW
2AKE|1|B|G|422AKE|1|B|G|42n0BP
2AKE|1|B|G|422AKE|1|B|U|29s55
2AKE|1|B|G|42||||7_5562AKE|1|B|A|41||||7_556s53
2AKE|1|B|G|42||||7_5562AKE|1|B|A|43||||7_556s35
2AKE|1|B|G|42||||7_5562AKE|1|B|C|28||||7_556cWW
2AKE|1|B|G|42||||7_5562AKE|1|B|G|42||||7_556n0BP
2AKE|1|B|G|42||||7_5562AKE|1|B|U|29||||7_556s55
2AKE|1|B|G|452AKE|1|B|A|44
2AKE|1|B|G|452AKE|1|B|G|46n0BP
2AKE|1|B|G|45||||7_5562AKE|1|B|A|44||||7_556
2AKE|1|B|G|45||||7_5562AKE|1|B|G|46||||7_556n0BP
2AKE|1|B|G|492AKE|1|B|C|50s35
2AKE|1|B|G|492AKE|1|B|C|66s55
2AKE|1|B|G|492AKE|1|B|G|49n0BP
2AKE|1|B|G|492AKE|1|B|G|7s53
2AKE|1|B|G|492AKE|1|B|U|65cWW
2AKE|1|B|G|49||||7_5562AKE|1|B|C|50||||7_556s35
2AKE|1|B|G|49||||7_5562AKE|1|B|C|66||||7_556s55
2AKE|1|B|G|49||||7_5562AKE|1|B|G|49||||7_556n0BP
2AKE|1|B|G|49||||7_5562AKE|1|B|G|7||||7_556s53
2AKE|1|B|G|49||||7_5562AKE|1|B|U|65||||7_556cWW
2AKE|1|B|G|512AKE|1|B|C|50s53
2AKE|1|B|G|512AKE|1|B|C|63cWW
2AKE|1|B|G|512AKE|1|B|G|510BPh
2AKE|1|B|G|512AKE|1|B|G|64s55
2AKE|1|B|G|512AKE|1|B|U|52s35
2AKE|1|B|G|51||||7_5562AKE|1|B|C|50||||7_556s53
2AKE|1|B|G|51||||7_5562AKE|1|B|C|63||||7_556cWW
2AKE|1|B|G|51||||7_5562AKE|1|B|G|51||||7_5560BPh
2AKE|1|B|G|51||||7_5562AKE|1|B|G|64||||7_556s55
2AKE|1|B|G|51||||7_5562AKE|1|B|U|52||||7_556s35
2AKE|1|B|G|532AKE|1|B|A|62s55
2AKE|1|B|G|532AKE|1|B|C|61cWW
2AKE|1|B|G|532AKE|1|B|G|530BPh
2AKE|1|B|G|532AKE|1|B|U|52s53
2AKE|1|B|G|532AKE|1|B|U|54s35
2AKE|1|B|G|53||||7_5562AKE|1|B|A|62||||7_556s55
2AKE|1|B|G|53||||7_5562AKE|1|B|C|61||||7_556cWW
2AKE|1|B|G|53||||7_5562AKE|1|B|G|53||||7_5560BPh
2AKE|1|B|G|53||||7_5562AKE|1|B|U|52||||7_556s53
2AKE|1|B|G|53||||7_5562AKE|1|B|U|54||||7_556s35
2AKE|1|B|G|572AKE|1|B|C|56s53
2AKE|1|B|G|572AKE|1|B|G|570BPh
2AKE|1|B|G|572AKE|1|B|U|16ntSH
2AKE|1|B|G|572AKE|1|B|U|55ns35
2AKE|1|B|G|57||||7_5562AKE|1|B|C|56||||7_556s53
2AKE|1|B|G|57||||7_5562AKE|1|B|G|57||||7_5560BPh
2AKE|1|B|G|57||||7_5562AKE|1|B|U|16||||7_556ntSH
2AKE|1|B|G|57||||7_5562AKE|1|B|U|55||||7_556ns35
2AKE|1|B|G|642AKE|1|B|C|50cWW
2AKE|1|B|G|642AKE|1|B|C|63s53
2AKE|1|B|G|642AKE|1|B|G|51s55
2AKE|1|B|G|642AKE|1|B|G|640BPh
2AKE|1|B|G|642AKE|1|B|U|65s35
2AKE|1|B|G|64||||7_5562AKE|1|B|C|50||||7_556cWW
2AKE|1|B|G|64||||7_5562AKE|1|B|C|63||||7_556s53
2AKE|1|B|G|64||||7_5562AKE|1|B|G|51||||7_556s55
2AKE|1|B|G|64||||7_5562AKE|1|B|G|64||||7_5560BPh
2AKE|1|B|G|64||||7_5562AKE|1|B|U|65||||7_556s35
2AKE|1|B|G|672AKE|1|B|C|6cWW
2AKE|1|B|G|672AKE|1|B|C|66s53
2AKE|1|B|G|672AKE|1|B|G|670BPh
2AKE|1|B|G|672AKE|1|B|G|68s35
2AKE|1|B|G|672AKE|1|B|G|7s55
2AKE|1|B|G|67||||7_5562AKE|1|B|C|66||||7_556s53
2AKE|1|B|G|67||||7_5562AKE|1|B|C|6||||7_556cWW
2AKE|1|B|G|67||||7_5562AKE|1|B|G|67||||7_5560BPh
2AKE|1|B|G|67||||7_5562AKE|1|B|G|68||||7_556s35
2AKE|1|B|G|67||||7_5562AKE|1|B|G|7||||7_556s55
2AKE|1|B|G|682AKE|1|B|C|6s55
2AKE|1|B|G|682AKE|1|B|G|67s53
2AKE|1|B|G|682AKE|1|B|G|680BPh
2AKE|1|B|G|682AKE|1|B|G|69s35
2AKE|1|B|G|682AKE|1|B|U|5cWW
2AKE|1|B|G|68||||7_5562AKE|1|B|C|6||||7_556s55
2AKE|1|B|G|68||||7_5562AKE|1|B|G|67||||7_556s53
2AKE|1|B|G|68||||7_5562AKE|1|B|G|68||||7_5560BPh
2AKE|1|B|G|68||||7_5562AKE|1|B|G|69||||7_556s35
2AKE|1|B|G|68||||7_5562AKE|1|B|U|5||||7_556cWW
2AKE|1|B|G|692AKE|1|B|C|4cWW
2AKE|1|B|G|692AKE|1|B|G|68s53
2AKE|1|B|G|692AKE|1|B|G|690BPh
2AKE|1|B|G|692AKE|1|B|G|70s35
2AKE|1|B|G|692AKE|1|B|U|5s55
2AKE|1|B|G|69||||7_5562AKE|1|B|C|4||||7_556cWW
2AKE|1|B|G|69||||7_5562AKE|1|B|G|68||||7_556s53
2AKE|1|B|G|69||||7_5562AKE|1|B|G|69||||7_5560BPh
2AKE|1|B|G|69||||7_5562AKE|1|B|G|70||||7_556s35
2AKE|1|B|G|69||||7_5562AKE|1|B|U|5||||7_556s55
2AKE|1|B|G|72AKE|1|B|C|6s53
2AKE|1|B|G|72AKE|1|B|C|66cWW
2AKE|1|B|G|72AKE|1|B|G|49s35
2AKE|1|B|G|72AKE|1|B|G|67s55
2AKE|1|B|G|72AKE|1|B|G|70BPh
2AKE|1|B|G|702AKE|1|B|C|3cWW
2AKE|1|B|G|702AKE|1|B|C|4s55
2AKE|1|B|G|702AKE|1|B|G|69s53
2AKE|1|B|G|702AKE|1|B|G|700BPh
2AKE|1|B|G|702AKE|1|B|U|71s35
2AKE|1|B|G|70||||7_5562AKE|1|B|C|3||||7_556cWW
2AKE|1|B|G|70||||7_5562AKE|1|B|C|4||||7_556s55
2AKE|1|B|G|70||||7_5562AKE|1|B|G|69||||7_556s53
2AKE|1|B|G|70||||7_5562AKE|1|B|G|70||||7_5560BPh
2AKE|1|B|G|70||||7_5562AKE|1|B|U|71||||7_556s35
2AKE|1|B|G|7||||7_5562AKE|1|B|C|66||||7_556cWW
2AKE|1|B|G|7||||7_5562AKE|1|B|C|6||||7_556s53
2AKE|1|B|G|7||||7_5562AKE|1|B|G|49||||7_556s35
2AKE|1|B|G|7||||7_5562AKE|1|B|G|67||||7_556s55
2AKE|1|B|G|7||||7_5562AKE|1|B|G|7||||7_5560BPh
2AKE|1|B|G|92AKE|1|B|A|21ns53
2AKE|1|B|G|92AKE|1|B|C|13ntHW
2AKE|1|B|G|92AKE|1|B|U|8
2AKE|1|B|G|9||||7_5562AKE|1|B|A|21||||7_556ns53
2AKE|1|B|G|9||||7_5562AKE|1|B|C|13||||7_556ntHW
2AKE|1|B|G|9||||7_5562AKE|1|B|U|8||||7_556
2AKE|1|B|U|162AKE|1|B|G|57ntHS
2AKE|1|B|U|162AKE|1|B|U|16n0BP
2AKE|1|B|U|16||||7_5562AKE|1|B|G|57||||7_556ntHS
2AKE|1|B|U|16||||7_5562AKE|1|B|U|16||||7_556n0BP
2AKE|1|B|U|202AKE|1|B|G|19
2AKE|1|B|U|202AKE|1|B|U|200BPh
2AKE|1|B|U|20||||7_5562AKE|1|B|G|19||||7_556
2AKE|1|B|U|20||||7_5562AKE|1|B|U|20||||7_5560BPh
2AKE|1|B|U|272AKE|1|B|A|43ncWW
2AKE|1|B|U|272AKE|1|B|C|28s35
2AKE|1|B|U|272AKE|1|B|G|26s53
2AKE|1|B|U|272AKE|1|B|U|270BPh
2AKE|1|B|U|27||||7_5562AKE|1|B|A|43||||7_556ncWW
2AKE|1|B|U|27||||7_5562AKE|1|B|C|28||||7_556s35
2AKE|1|B|U|27||||7_5562AKE|1|B|G|26||||7_556s53
2AKE|1|B|U|27||||7_5562AKE|1|B|U|27||||7_5560BPh
2AKE|1|B|U|292AKE|1|B|A|41cWW
2AKE|1|B|U|292AKE|1|B|C|28ns53
2AKE|1|B|U|292AKE|1|B|G|30s35
2AKE|1|B|U|292AKE|1|B|G|42s55
2AKE|1|B|U|29||||7_5562AKE|1|B|A|41||||7_556cWW
2AKE|1|B|U|29||||7_5562AKE|1|B|C|28||||7_556ns53
2AKE|1|B|U|29||||7_5562AKE|1|B|G|30||||7_556s35
2AKE|1|B|U|29||||7_5562AKE|1|B|G|42||||7_556s55
2AKE|1|B|U|332AKE|1|B|C|32
2AKE|1|B|U|332AKE|1|B|C|34
2AKE|1|B|U|332AKE|1|B|C|355BPh
2AKE|1|B|U|33||||7_5562AKE|1|B|C|32||||7_556
2AKE|1|B|U|33||||7_5562AKE|1|B|C|34||||7_556
2AKE|1|B|U|33||||7_5562AKE|1|B|C|35||||7_5565BPh
2AKE|1|B|U|392AKE|1|B|A|31cWW
2AKE|1|B|U|392AKE|1|B|A|38s55
2AKE|1|B|U|392AKE|1|B|C|40s35
2AKE|1|B|U|392AKE|1|B|U|390BPh
2AKE|1|B|U|39||||7_5562AKE|1|B|A|31||||7_556cWW
2AKE|1|B|U|39||||7_5562AKE|1|B|A|38||||7_556s55
2AKE|1|B|U|39||||7_5562AKE|1|B|C|40||||7_556s35
2AKE|1|B|U|39||||7_5562AKE|1|B|U|39||||7_5560BPh
2AKE|1|B|U|472AKE|1|B|U|470BPh
2AKE|1|B|U|47||||7_5562AKE|1|B|U|47||||7_5560BPh
2AKE|1|B|U|482AKE|1|B|U|48n0BP
2AKE|1|B|U|48||||7_5562AKE|1|B|U|48||||7_556n0BP
2AKE|1|B|U|52AKE|1|B|C|4s53
2AKE|1|B|U|52AKE|1|B|C|6s35
2AKE|1|B|U|52AKE|1|B|G|68cWW
2AKE|1|B|U|52AKE|1|B|G|69s55
2AKE|1|B|U|52AKE|1|B|U|50BPh
2AKE|1|B|U|522AKE|1|B|A|62cWW
2AKE|1|B|U|522AKE|1|B|G|51s53
2AKE|1|B|U|522AKE|1|B|G|53s35
2AKE|1|B|U|522AKE|1|B|U|52n0BP
2AKE|1|B|U|52||||7_5562AKE|1|B|A|62||||7_556cWW
2AKE|1|B|U|52||||7_5562AKE|1|B|G|51||||7_556s53
2AKE|1|B|U|52||||7_5562AKE|1|B|G|53||||7_556s35
2AKE|1|B|U|52||||7_5562AKE|1|B|U|52||||7_556n0BP
2AKE|1|B|U|542AKE|1|B|A|58tWH
2AKE|1|B|U|542AKE|1|B|G|53s53
2AKE|1|B|U|542AKE|1|B|U|540BPh
2AKE|1|B|U|542AKE|1|B|U|55s33
2AKE|1|B|U|54||||7_5562AKE|1|B|A|58||||7_556tWH
2AKE|1|B|U|54||||7_5562AKE|1|B|G|53||||7_556s53
2AKE|1|B|U|54||||7_5562AKE|1|B|U|54||||7_5560BPh
2AKE|1|B|U|54||||7_5562AKE|1|B|U|55||||7_556s33
2AKE|1|B|U|552AKE|1|B|G|57ns53
2AKE|1|B|U|552AKE|1|B|U|54s33
2AKE|1|B|U|55||||7_5562AKE|1|B|G|57||||7_556ns53
2AKE|1|B|U|55||||7_5562AKE|1|B|U|54||||7_556s33
2AKE|1|B|U|5||||7_5562AKE|1|B|C|4||||7_556s53
2AKE|1|B|U|5||||7_5562AKE|1|B|C|6||||7_556s35
2AKE|1|B|U|5||||7_5562AKE|1|B|G|68||||7_556cWW
2AKE|1|B|U|5||||7_5562AKE|1|B|G|69||||7_556s55
2AKE|1|B|U|5||||7_5562AKE|1|B|U|5||||7_5560BPh
2AKE|1|B|U|602AKE|1|B|A|58
2AKE|1|B|U|602AKE|1|B|A|59s53n9BP
2AKE|1|B|U|602AKE|1|B|U|600BPh
2AKE|1|B|U|60||||7_5562AKE|1|B|A|58||||7_556
2AKE|1|B|U|60||||7_5562AKE|1|B|A|59||||7_556s53n9BP
2AKE|1|B|U|60||||7_5562AKE|1|B|U|60||||7_5560BPh
2AKE|1|B|U|652AKE|1|B|C|66s35
2AKE|1|B|U|652AKE|1|B|G|49cWW
2AKE|1|B|U|652AKE|1|B|G|64s53
2AKE|1|B|U|652AKE|1|B|U|650BPh
2AKE|1|B|U|65||||7_5562AKE|1|B|C|66||||7_556s35
2AKE|1|B|U|65||||7_5562AKE|1|B|G|49||||7_556cWW
2AKE|1|B|U|65||||7_5562AKE|1|B|G|64||||7_556s53
2AKE|1|B|U|65||||7_5562AKE|1|B|U|65||||7_5560BPh
2AKE|1|B|U|712AKE|1|B|A|2cWW
2AKE|1|B|U|712AKE|1|B|C|72s35
2AKE|1|B|U|712AKE|1|B|G|70s53
2AKE|1|B|U|712AKE|1|B|U|710BPh
2AKE|1|B|U|71||||7_5562AKE|1|B|A|2||||7_556cWW
2AKE|1|B|U|71||||7_5562AKE|1|B|C|72||||7_556s35
2AKE|1|B|U|71||||7_5562AKE|1|B|G|70||||7_556s53
2AKE|1|B|U|71||||7_5562AKE|1|B|U|71||||7_5560BPh
2AKE|1|B|U|82AKE|1|B|C|13
2AKE|1|B|U|82AKE|1|B|G|12
2AKE|1|B|U|8||||7_5562AKE|1|B|C|13||||7_556
2AKE|1|B|U|8||||7_5562AKE|1|B|G|12||||7_556


Base-PairsCount (44)Relative Frequency
cWW400.909
tWH20.045
cWS20.045
Base-PhosphateCount (94)Relative Frequency
5BPh20.021
6BPh20.021
8BPh20.021
9BPh20.021
0BPh860.915
Base-StackingCount (64)Relative Frequency
s3340.062
s53340.531
s55260.406

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)