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As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0179  PDB ID: 2B2G 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2B2G|1|R|A|302||||P_12B2G|1|R|A|302||||P_10BPh
2B2G|1|R|A|302||||P_12B2G|1|R|G|317||||P_1s55
2B2G|1|R|A|302||||P_12B2G|1|R|U|303||||P_1s35
2B2G|1|R|A|302||||P_12B2G|1|R|U|316||||P_1cWW
2B2G|1|R|A|302||||P_P2B2G|1|R|A|302||||P_P0BPh
2B2G|1|R|A|302||||P_P2B2G|1|R|G|317||||P_Ps55
2B2G|1|R|A|302||||P_P2B2G|1|R|U|303||||P_Ps35
2B2G|1|R|A|302||||P_P2B2G|1|R|U|316||||P_PcWW
2B2G|1|R|A|308||||P_12B2G|1|R|A|308||||P_10BPh
2B2G|1|R|A|308||||P_12B2G|1|R|C|312||||P_1s55
2B2G|1|R|A|308||||P_12B2G|1|R|G|307||||P_1s53
2B2G|1|R|A|308||||P_12B2G|1|R|U|310||||P_1s35
2B2G|1|R|A|308||||P_P2B2G|1|R|A|308||||P_P0BPh
2B2G|1|R|A|308||||P_P2B2G|1|R|C|312||||P_Ps55
2B2G|1|R|A|308||||P_P2B2G|1|R|G|307||||P_Ps53
2B2G|1|R|A|308||||P_P2B2G|1|R|U|310||||P_Ps35
2B2G|1|R|A|311||||P_12B2G|1|R|A|311||||P_1n0BP
2B2G|1|R|A|311||||P_P2B2G|1|R|A|311||||P_Pn0BP
2B2G|1|R|A|315||||P_12B2G|1|R|A|315||||P_10BPh
2B2G|1|R|A|315||||P_12B2G|1|R|C|314||||P_1s53
2B2G|1|R|A|315||||P_12B2G|1|R|G|304||||P_1s55
2B2G|1|R|A|315||||P_12B2G|1|R|U|303||||P_1cWW
2B2G|1|R|A|315||||P_12B2G|1|R|U|316||||P_1s35
2B2G|1|R|A|315||||P_P2B2G|1|R|A|315||||P_P0BPh
2B2G|1|R|A|315||||P_P2B2G|1|R|C|314||||P_Ps53
2B2G|1|R|A|315||||P_P2B2G|1|R|G|304||||P_Ps55
2B2G|1|R|A|315||||P_P2B2G|1|R|U|303||||P_PcWW
2B2G|1|R|A|315||||P_P2B2G|1|R|U|316||||P_Ps35
2B2G|1|R|C|312||||P_12B2G|1|R|A|308||||P_1s55
2B2G|1|R|C|312||||P_12B2G|1|R|C|313||||P_1s35
2B2G|1|R|C|312||||P_12B2G|1|R|G|307||||P_1cWW
2B2G|1|R|C|312||||P_P2B2G|1|R|A|308||||P_Ps55
2B2G|1|R|C|312||||P_P2B2G|1|R|C|313||||P_Ps35
2B2G|1|R|C|312||||P_P2B2G|1|R|G|307||||P_PcWW
2B2G|1|R|C|313||||P_12B2G|1|R|C|312||||P_1s53
2B2G|1|R|C|313||||P_12B2G|1|R|C|313||||P_10BPh
2B2G|1|R|C|313||||P_12B2G|1|R|C|314||||P_1s35
2B2G|1|R|C|313||||P_12B2G|1|R|G|306||||P_1cWW
2B2G|1|R|C|313||||P_12B2G|1|R|G|307||||P_1s55
2B2G|1|R|C|313||||P_P2B2G|1|R|C|312||||P_Ps53
2B2G|1|R|C|313||||P_P2B2G|1|R|C|313||||P_P0BPh
2B2G|1|R|C|313||||P_P2B2G|1|R|C|314||||P_Ps35
2B2G|1|R|C|313||||P_P2B2G|1|R|G|306||||P_PcWW
2B2G|1|R|C|313||||P_P2B2G|1|R|G|307||||P_Ps55
2B2G|1|R|C|314||||P_12B2G|1|R|A|315||||P_1s35
2B2G|1|R|C|314||||P_12B2G|1|R|C|313||||P_1s53
2B2G|1|R|C|314||||P_12B2G|1|R|C|314||||P_10BPh
2B2G|1|R|C|314||||P_12B2G|1|R|G|304||||P_1cWW
2B2G|1|R|C|314||||P_12B2G|1|R|G|306||||P_1s55
2B2G|1|R|C|314||||P_P2B2G|1|R|A|315||||P_Ps35
2B2G|1|R|C|314||||P_P2B2G|1|R|C|313||||P_Ps53
2B2G|1|R|C|314||||P_P2B2G|1|R|C|314||||P_P0BPh
2B2G|1|R|C|314||||P_P2B2G|1|R|G|304||||P_PcWW
2B2G|1|R|C|314||||P_P2B2G|1|R|G|306||||P_Ps55
2B2G|1|R|G|304||||P_12B2G|1|R|A|315||||P_1s55
2B2G|1|R|G|304||||P_12B2G|1|R|C|314||||P_1cWW
2B2G|1|R|G|304||||P_12B2G|1|R|G|304||||P_10BPh
2B2G|1|R|G|304||||P_12B2G|1|R|G|306||||P_1s35
2B2G|1|R|G|304||||P_12B2G|1|R|U|303||||P_1s53
2B2G|1|R|G|304||||P_P2B2G|1|R|A|315||||P_Ps55
2B2G|1|R|G|304||||P_P2B2G|1|R|C|314||||P_PcWW
2B2G|1|R|G|304||||P_P2B2G|1|R|G|304||||P_P0BPh
2B2G|1|R|G|304||||P_P2B2G|1|R|G|306||||P_Ps35
2B2G|1|R|G|304||||P_P2B2G|1|R|U|303||||P_Ps53
2B2G|1|R|G|306||||P_12B2G|1|R|C|313||||P_1cWW
2B2G|1|R|G|306||||P_12B2G|1|R|C|314||||P_1s55
2B2G|1|R|G|306||||P_12B2G|1|R|G|304||||P_1s53
2B2G|1|R|G|306||||P_12B2G|1|R|G|307||||P_1s35
2B2G|1|R|G|306||||P_P2B2G|1|R|C|313||||P_PcWW
2B2G|1|R|G|306||||P_P2B2G|1|R|C|314||||P_Ps55
2B2G|1|R|G|306||||P_P2B2G|1|R|G|304||||P_Ps53
2B2G|1|R|G|306||||P_P2B2G|1|R|G|307||||P_Ps35
2B2G|1|R|G|307||||P_12B2G|1|R|A|308||||P_1s35
2B2G|1|R|G|307||||P_12B2G|1|R|C|312||||P_1cWW
2B2G|1|R|G|307||||P_12B2G|1|R|C|313||||P_1s55
2B2G|1|R|G|307||||P_12B2G|1|R|G|306||||P_1s53
2B2G|1|R|G|307||||P_12B2G|1|R|G|307||||P_1n0BP
2B2G|1|R|G|307||||P_P2B2G|1|R|A|308||||P_Ps35
2B2G|1|R|G|307||||P_P2B2G|1|R|C|312||||P_PcWW
2B2G|1|R|G|307||||P_P2B2G|1|R|C|313||||P_Ps55
2B2G|1|R|G|307||||P_P2B2G|1|R|G|306||||P_Ps53
2B2G|1|R|G|307||||P_P2B2G|1|R|G|307||||P_Pn0BP
2B2G|1|R|G|317||||P_12B2G|1|R|A|302||||P_1s55
2B2G|1|R|G|317||||P_12B2G|1|R|G|317||||P_10BPh
2B2G|1|R|G|317||||P_P2B2G|1|R|A|302||||P_Ps55
2B2G|1|R|G|317||||P_P2B2G|1|R|G|317||||P_P0BPh
2B2G|1|R|U|303||||P_12B2G|1|R|A|302||||P_1s53
2B2G|1|R|U|303||||P_12B2G|1|R|A|315||||P_1cWW
2B2G|1|R|U|303||||P_12B2G|1|R|G|304||||P_1s35
2B2G|1|R|U|303||||P_12B2G|1|R|U|303||||P_10BPh
2B2G|1|R|U|303||||P_P2B2G|1|R|A|302||||P_Ps53
2B2G|1|R|U|303||||P_P2B2G|1|R|A|315||||P_PcWW
2B2G|1|R|U|303||||P_P2B2G|1|R|G|304||||P_Ps35
2B2G|1|R|U|303||||P_P2B2G|1|R|U|303||||P_P0BPh
2B2G|1|R|U|309||||P_12B2G|1|R|U|309||||P_10BPh
2B2G|1|R|U|309||||P_P2B2G|1|R|U|309||||P_P0BPh
2B2G|1|R|U|310||||P_12B2G|1|R|A|308||||P_1s53
2B2G|1|R|U|310||||P_12B2G|1|R|U|309||||P_19BPh
2B2G|1|R|U|310||||P_12B2G|1|R|U|310||||P_10BPh
2B2G|1|R|U|310||||P_P2B2G|1|R|A|308||||P_Ps53
2B2G|1|R|U|310||||P_P2B2G|1|R|U|309||||P_P9BPh
2B2G|1|R|U|310||||P_P2B2G|1|R|U|310||||P_P0BPh
2B2G|1|R|U|316||||P_12B2G|1|R|A|302||||P_1cWW
2B2G|1|R|U|316||||P_12B2G|1|R|A|315||||P_1s53
2B2G|1|R|U|316||||P_12B2G|1|R|U|316||||P_10BPh
2B2G|1|R|U|316||||P_P2B2G|1|R|A|302||||P_PcWW
2B2G|1|R|U|316||||P_P2B2G|1|R|A|315||||P_Ps53
2B2G|1|R|U|316||||P_P2B2G|1|R|U|316||||P_P0BPh
2B2G|1|S|A|402||||P_12B2G|1|S|A|402||||P_1n0BP
2B2G|1|S|A|402||||P_12B2G|1|S|A|415||||P_1ns33
2B2G|1|S|A|402||||P_12B2G|1|S|U|416||||P_1ncWW
2B2G|1|S|A|402||||P_P2B2G|1|S|A|402||||P_Pn0BP
2B2G|1|S|A|402||||P_P2B2G|1|S|A|415||||P_Pns33
2B2G|1|S|A|402||||P_P2B2G|1|S|U|416||||P_PncWW
2B2G|1|S|A|408||||P_12B2G|1|S|A|408||||P_10BPh
2B2G|1|S|A|408||||P_12B2G|1|S|A|411||||P_1n2BP
2B2G|1|S|A|408||||P_12B2G|1|S|C|412||||P_1s55
2B2G|1|S|A|408||||P_12B2G|1|S|G|407||||P_1s53
2B2G|1|S|A|408||||P_12B2G|1|S|U|410||||P_1s35
2B2G|1|S|A|408||||P_P2B2G|1|S|A|408||||P_P0BPh
2B2G|1|S|A|408||||P_P2B2G|1|S|A|411||||P_Pn2BP
2B2G|1|S|A|408||||P_P2B2G|1|S|C|412||||P_Ps55
2B2G|1|S|A|408||||P_P2B2G|1|S|G|407||||P_Ps53
2B2G|1|S|A|408||||P_P2B2G|1|S|U|410||||P_Ps35
2B2G|1|S|A|411||||P_12B2G|1|S|A|411||||P_10BPh
2B2G|1|S|A|411||||P_P2B2G|1|S|A|411||||P_P0BPh
2B2G|1|S|A|415||||P_12B2G|1|S|A|402||||P_1ns33
2B2G|1|S|A|415||||P_12B2G|1|S|A|415||||P_10BPh
2B2G|1|S|A|415||||P_12B2G|1|S|C|414||||P_1ns53
2B2G|1|S|A|415||||P_12B2G|1|S|G|404||||P_1s55
2B2G|1|S|A|415||||P_12B2G|1|S|U|403||||P_1cWW
2B2G|1|S|A|415||||P_12B2G|1|S|U|416||||P_1s35
2B2G|1|S|A|415||||P_P2B2G|1|S|A|402||||P_Pns33
2B2G|1|S|A|415||||P_P2B2G|1|S|A|415||||P_P0BPh
2B2G|1|S|A|415||||P_P2B2G|1|S|C|414||||P_Pns53
2B2G|1|S|A|415||||P_P2B2G|1|S|G|404||||P_Ps55
2B2G|1|S|A|415||||P_P2B2G|1|S|U|403||||P_PcWW
2B2G|1|S|A|415||||P_P2B2G|1|S|U|416||||P_Ps35
2B2G|1|S|C|412||||P_12B2G|1|S|A|408||||P_1s55
2B2G|1|S|C|412||||P_12B2G|1|S|C|412||||P_1n0BP
2B2G|1|S|C|412||||P_12B2G|1|S|C|413||||P_1s35
2B2G|1|S|C|412||||P_12B2G|1|S|G|407||||P_1cWW
2B2G|1|S|C|412||||P_P2B2G|1|S|A|408||||P_Ps55
2B2G|1|S|C|412||||P_P2B2G|1|S|C|412||||P_Pn0BP
2B2G|1|S|C|412||||P_P2B2G|1|S|C|413||||P_Ps35
2B2G|1|S|C|412||||P_P2B2G|1|S|G|407||||P_PcWW
2B2G|1|S|C|413||||P_12B2G|1|S|C|412||||P_1s53
2B2G|1|S|C|413||||P_12B2G|1|S|C|413||||P_10BPh
2B2G|1|S|C|413||||P_12B2G|1|S|C|414||||P_1s35
2B2G|1|S|C|413||||P_12B2G|1|S|G|406||||P_1cWW
2B2G|1|S|C|413||||P_12B2G|1|S|G|407||||P_1s55
2B2G|1|S|C|413||||P_P2B2G|1|S|C|412||||P_Ps53
2B2G|1|S|C|413||||P_P2B2G|1|S|C|413||||P_P0BPh
2B2G|1|S|C|413||||P_P2B2G|1|S|C|414||||P_Ps35
2B2G|1|S|C|413||||P_P2B2G|1|S|G|406||||P_PcWW
2B2G|1|S|C|413||||P_P2B2G|1|S|G|407||||P_Ps55
2B2G|1|S|C|414||||P_12B2G|1|S|A|415||||P_1ns35
2B2G|1|S|C|414||||P_12B2G|1|S|C|413||||P_1s53
2B2G|1|S|C|414||||P_12B2G|1|S|C|414||||P_10BPh
2B2G|1|S|C|414||||P_12B2G|1|S|G|404||||P_1cWW
2B2G|1|S|C|414||||P_12B2G|1|S|G|406||||P_1s55
2B2G|1|S|C|414||||P_P2B2G|1|S|A|415||||P_Pns35
2B2G|1|S|C|414||||P_P2B2G|1|S|C|413||||P_Ps53
2B2G|1|S|C|414||||P_P2B2G|1|S|C|414||||P_P0BPh
2B2G|1|S|C|414||||P_P2B2G|1|S|G|404||||P_PcWW
2B2G|1|S|C|414||||P_P2B2G|1|S|G|406||||P_Ps55
2B2G|1|S|G|404||||P_12B2G|1|S|A|415||||P_1s55
2B2G|1|S|G|404||||P_12B2G|1|S|C|414||||P_1cWW
2B2G|1|S|G|404||||P_12B2G|1|S|G|404||||P_1n0BP
2B2G|1|S|G|404||||P_12B2G|1|S|G|406||||P_1s35
2B2G|1|S|G|404||||P_12B2G|1|S|U|403||||P_1s53
2B2G|1|S|G|404||||P_P2B2G|1|S|A|415||||P_Ps55
2B2G|1|S|G|404||||P_P2B2G|1|S|C|414||||P_PcWW
2B2G|1|S|G|404||||P_P2B2G|1|S|G|404||||P_Pn0BP
2B2G|1|S|G|404||||P_P2B2G|1|S|G|406||||P_Ps35
2B2G|1|S|G|404||||P_P2B2G|1|S|U|403||||P_Ps53
2B2G|1|S|G|406||||P_12B2G|1|S|A|405||||P_1n0BP
2B2G|1|S|G|406||||P_12B2G|1|S|C|413||||P_1cWW
2B2G|1|S|G|406||||P_12B2G|1|S|C|414||||P_1s55
2B2G|1|S|G|406||||P_12B2G|1|S|G|404||||P_1s53
2B2G|1|S|G|406||||P_12B2G|1|S|G|407||||P_1s35
2B2G|1|S|G|406||||P_P2B2G|1|S|A|405||||P_Pn0BP
2B2G|1|S|G|406||||P_P2B2G|1|S|C|413||||P_PcWW
2B2G|1|S|G|406||||P_P2B2G|1|S|C|414||||P_Ps55
2B2G|1|S|G|406||||P_P2B2G|1|S|G|404||||P_Ps53
2B2G|1|S|G|406||||P_P2B2G|1|S|G|407||||P_Ps35
2B2G|1|S|G|407||||P_12B2G|1|S|A|408||||P_1s35
2B2G|1|S|G|407||||P_12B2G|1|S|C|412||||P_1cWW
2B2G|1|S|G|407||||P_12B2G|1|S|C|413||||P_1s55
2B2G|1|S|G|407||||P_12B2G|1|S|G|406||||P_1s53
2B2G|1|S|G|407||||P_12B2G|1|S|G|407||||P_10BPh
2B2G|1|S|G|407||||P_P2B2G|1|S|A|408||||P_Ps35
2B2G|1|S|G|407||||P_P2B2G|1|S|C|412||||P_PcWW
2B2G|1|S|G|407||||P_P2B2G|1|S|C|413||||P_Ps55
2B2G|1|S|G|407||||P_P2B2G|1|S|G|406||||P_Ps53
2B2G|1|S|G|407||||P_P2B2G|1|S|G|407||||P_P0BPh
2B2G|1|S|U|403||||P_12B2G|1|S|A|402||||P_1
2B2G|1|S|U|403||||P_12B2G|1|S|A|415||||P_1cWW
2B2G|1|S|U|403||||P_12B2G|1|S|G|404||||P_1s35
2B2G|1|S|U|403||||P_12B2G|1|S|U|403||||P_10BPh
2B2G|1|S|U|403||||P_P2B2G|1|S|A|402||||P_P
2B2G|1|S|U|403||||P_P2B2G|1|S|A|415||||P_PcWW
2B2G|1|S|U|403||||P_P2B2G|1|S|G|404||||P_Ps35
2B2G|1|S|U|403||||P_P2B2G|1|S|U|403||||P_P0BPh
2B2G|1|S|U|409||||P_12B2G|1|S|U|409||||P_1n0BP
2B2G|1|S|U|409||||P_P2B2G|1|S|U|409||||P_Pn0BP
2B2G|1|S|U|410||||P_12B2G|1|S|A|408||||P_1s53
2B2G|1|S|U|410||||P_12B2G|1|S|U|409||||P_19BPh
2B2G|1|S|U|410||||P_12B2G|1|S|U|410||||P_10BPh
2B2G|1|S|U|410||||P_P2B2G|1|S|A|408||||P_Ps53
2B2G|1|S|U|410||||P_P2B2G|1|S|U|409||||P_P9BPh
2B2G|1|S|U|410||||P_P2B2G|1|S|U|410||||P_P0BPh
2B2G|1|S|U|416||||P_12B2G|1|S|A|402||||P_1ncWW
2B2G|1|S|U|416||||P_12B2G|1|S|A|415||||P_1s53
2B2G|1|S|U|416||||P_12B2G|1|S|U|416||||P_10BPh
2B2G|1|S|U|416||||P_P2B2G|1|S|A|402||||P_PncWW
2B2G|1|S|U|416||||P_P2B2G|1|S|A|415||||P_Ps53
2B2G|1|S|U|416||||P_P2B2G|1|S|U|416||||P_P0BPh


Base-PairsCount (18)Relative Frequency
cWW181.000
Base-PhosphateCount (44)Relative Frequency
9BPh40.091
0BPh400.909
Base-StackingCount (28)Relative Frequency
s53100.357
s55180.643

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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