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As of 18-May-2022 number of released structures: 12082
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NDB ID: PR0180  PDB ID: 2B3J 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2B3J|1|E|A|312B3J|1|E|A|310BPh
2B3J|1|E|A|312B3J|1|E|C|32s35
2B3J|1|E|A|312B3J|1|E|G|30s53
2B3J|1|E|A|312B3J|1|E|U|39cWW
2B3J|1|E|A|382B3J|1|E|A|380BPh
2B3J|1|E|A|382B3J|1|E|C|32
2B3J|1|E|A|382B3J|1|E|G|36s53
2B3J|1|E|A|382B3J|1|E|U|39s35
2B3J|1|E|A|412B3J|1|E|A|410BPh
2B3J|1|E|A|412B3J|1|E|A|42s35
2B3J|1|E|A|412B3J|1|E|C|40s53
2B3J|1|E|A|412B3J|1|E|G|30s55
2B3J|1|E|A|412B3J|1|E|U|29cWW
2B3J|1|E|A|422B3J|1|E|A|41s53
2B3J|1|E|A|422B3J|1|E|A|420BPh
2B3J|1|E|A|422B3J|1|E|U|28cWW
2B3J|1|E|A|422B3J|1|E|U|29ns55
2B3J|1|E|C|322B3J|1|E|A|31s53
2B3J|1|E|C|322B3J|1|E|A|38
2B3J|1|E|C|322B3J|1|E|C|320BPh
2B3J|1|E|C|322B3J|1|E|G|36s33
2B3J|1|E|C|352B3J|1|E|C|35n0BP
2B3J|1|E|C|402B3J|1|E|A|41s35
2B3J|1|E|C|402B3J|1|E|C|400BPh
2B3J|1|E|C|402B3J|1|E|G|30cWW
2B3J|1|E|C|402B3J|1|E|U|39s53
2B3J|1|E|G|302B3J|1|E|A|31s35
2B3J|1|E|G|302B3J|1|E|A|41s55
2B3J|1|E|G|302B3J|1|E|C|40cWW
2B3J|1|E|G|302B3J|1|E|G|30n0BP
2B3J|1|E|G|302B3J|1|E|U|29s53
2B3J|1|E|G|362B3J|1|E|A|38s35
2B3J|1|E|G|362B3J|1|E|C|32s33
2B3J|1|E|G|362B3J|1|E|G|36n1BP
2B3J|1|E|G|372B3J|1|E|G|370BPh
2B3J|1|E|U|282B3J|1|E|A|42cWW
2B3J|1|E|U|282B3J|1|E|U|29s35
2B3J|1|E|U|292B3J|1|E|A|41cWW
2B3J|1|E|U|292B3J|1|E|A|42ns55
2B3J|1|E|U|292B3J|1|E|G|30s35
2B3J|1|E|U|292B3J|1|E|U|28s53
2B3J|1|E|U|292B3J|1|E|U|290BPh
2B3J|1|E|U|332B3J|1|E|U|330BPh
2B3J|1|E|U|392B3J|1|E|A|31cWW
2B3J|1|E|U|392B3J|1|E|A|38s53
2B3J|1|E|U|392B3J|1|E|C|40s35
2B3J|1|E|U|392B3J|1|E|U|390BPh
2B3J|1|F|A|312B3J|1|F|A|310BPh
2B3J|1|F|A|312B3J|1|F|C|32s35
2B3J|1|F|A|312B3J|1|F|G|30s53
2B3J|1|F|A|312B3J|1|F|U|39cWW
2B3J|1|F|A|382B3J|1|F|A|380BPh
2B3J|1|F|A|382B3J|1|F|C|32
2B3J|1|F|A|382B3J|1|F|G|36s53
2B3J|1|F|A|382B3J|1|F|G|37
2B3J|1|F|A|382B3J|1|F|U|39s35
2B3J|1|F|A|412B3J|1|F|A|410BPh
2B3J|1|F|A|412B3J|1|F|A|42s35
2B3J|1|F|A|412B3J|1|F|C|40s53
2B3J|1|F|A|412B3J|1|F|G|30s55
2B3J|1|F|A|412B3J|1|F|U|29cWW
2B3J|1|F|A|422B3J|1|F|A|41s53
2B3J|1|F|A|422B3J|1|F|A|420BPh
2B3J|1|F|A|422B3J|1|F|U|28ncWW
2B3J|1|F|A|422B3J|1|H|U|27s33
2B3J|1|F|C|322B3J|1|F|A|31s53
2B3J|1|F|C|322B3J|1|F|A|38
2B3J|1|F|C|322B3J|1|F|C|320BPh
2B3J|1|F|C|322B3J|1|F|G|36s33
2B3J|1|F|C|352B3J|1|F|C|35n0BP
2B3J|1|F|C|402B3J|1|F|A|41s35
2B3J|1|F|C|402B3J|1|F|C|400BPh
2B3J|1|F|C|402B3J|1|F|G|30cWW
2B3J|1|F|C|402B3J|1|F|U|39s53
2B3J|1|F|G|302B3J|1|F|A|31s35
2B3J|1|F|G|302B3J|1|F|A|41s55
2B3J|1|F|G|302B3J|1|F|C|40cWW
2B3J|1|F|G|302B3J|1|F|G|30n0BP
2B3J|1|F|G|302B3J|1|F|U|29s53
2B3J|1|F|G|362B3J|1|F|A|38s35
2B3J|1|F|G|362B3J|1|F|C|32s33
2B3J|1|F|G|362B3J|1|F|G|361BPh
2B3J|1|F|G|372B3J|1|F|G|370BPh
2B3J|1|F|U|282B3J|1|F|A|42ncWW
2B3J|1|F|U|282B3J|1|F|U|28n0BP
2B3J|1|F|U|282B3J|1|F|U|29s35
2B3J|1|F|U|292B3J|1|F|A|41cWW
2B3J|1|F|U|292B3J|1|F|G|30s35
2B3J|1|F|U|292B3J|1|F|U|28s53
2B3J|1|F|U|292B3J|1|F|U|290BPh
2B3J|1|F|U|332B3J|1|F|U|330BPh
2B3J|1|F|U|392B3J|1|F|A|31cWW
2B3J|1|F|U|392B3J|1|F|A|38s53
2B3J|1|F|U|392B3J|1|F|C|40s35
2B3J|1|F|U|392B3J|1|F|U|390BPh
2B3J|1|G|A|312B3J|1|G|A|310BPh
2B3J|1|G|A|312B3J|1|G|C|32s35
2B3J|1|G|A|312B3J|1|G|G|30s53
2B3J|1|G|C|322B3J|1|G|A|31s53
2B3J|1|G|C|322B3J|1|G|C|320BPh
2B3J|1|G|C|322B3J|1|G|G|36s33
2B3J|1|G|C|322B3J|1|G|G|37cWW
2B3J|1|G|C|352B3J|1|G|C|35n0BP
2B3J|1|G|G|302B3J|1|G|A|31s35
2B3J|1|G|G|362B3J|1|G|C|32s33
2B3J|1|G|G|362B3J|1|G|G|36n1BP
2B3J|1|G|G|362B3J|1|G|G|37s35
2B3J|1|G|G|372B3J|1|G|C|32cWW
2B3J|1|G|G|372B3J|1|G|G|36s53
2B3J|1|G|U|332B3J|1|G|U|330BPh
2B3J|1|H|A|312B3J|1|H|A|31n0BP
2B3J|1|H|A|312B3J|1|H|C|32s35
2B3J|1|H|A|312B3J|1|H|C|40ns55
2B3J|1|H|A|312B3J|1|H|G|30s53
2B3J|1|H|A|312B3J|1|H|U|39cWW
2B3J|1|H|A|382B3J|1|H|A|380BPh
2B3J|1|H|A|382B3J|1|H|C|32
2B3J|1|H|A|382B3J|1|H|G|36s53
2B3J|1|H|A|382B3J|1|H|U|39s35
2B3J|1|H|A|412B3J|1|H|A|410BPh
2B3J|1|H|A|412B3J|1|H|A|42s35
2B3J|1|H|A|412B3J|1|H|C|40s53
2B3J|1|H|A|412B3J|1|H|G|30s55
2B3J|1|H|A|412B3J|1|H|U|29cWW
2B3J|1|H|A|422B3J|1|H|A|41s53
2B3J|1|H|A|422B3J|1|H|A|420BPh
2B3J|1|H|A|422B3J|1|H|U|28cWW
2B3J|1|H|C|322B3J|1|H|A|31s53
2B3J|1|H|C|322B3J|1|H|A|38
2B3J|1|H|C|322B3J|1|H|C|320BPh
2B3J|1|H|C|322B3J|1|H|G|36s33
2B3J|1|H|C|402B3J|1|H|A|31ns55
2B3J|1|H|C|402B3J|1|H|A|41s35
2B3J|1|H|C|402B3J|1|H|C|400BPh
2B3J|1|H|C|402B3J|1|H|G|30cWW
2B3J|1|H|C|402B3J|1|H|U|39s53
2B3J|1|H|G|302B3J|1|H|A|31s35
2B3J|1|H|G|302B3J|1|H|A|41s55
2B3J|1|H|G|302B3J|1|H|C|40cWW
2B3J|1|H|G|302B3J|1|H|G|300BPh
2B3J|1|H|G|302B3J|1|H|U|29s53
2B3J|1|H|G|362B3J|1|H|A|38s35
2B3J|1|H|G|362B3J|1|H|C|32s33
2B3J|1|H|G|362B3J|1|H|G|36n1BP
2B3J|1|H|G|372B3J|1|H|G|370BPh
2B3J|1|H|U|272B3J|1|F|A|42s33
2B3J|1|H|U|272B3J|1|H|U|28s55
2B3J|1|H|U|282B3J|1|H|A|42cWW
2B3J|1|H|U|282B3J|1|H|U|27s55
2B3J|1|H|U|282B3J|1|H|U|280BPh
2B3J|1|H|U|282B3J|1|H|U|29s35
2B3J|1|H|U|292B3J|1|H|A|41cWW
2B3J|1|H|U|292B3J|1|H|G|30s35
2B3J|1|H|U|292B3J|1|H|U|28s53
2B3J|1|H|U|292B3J|1|H|U|290BPh
2B3J|1|H|U|332B3J|1|H|U|330BPh
2B3J|1|H|U|392B3J|1|H|A|31cWW
2B3J|1|H|U|392B3J|1|H|A|38s53
2B3J|1|H|U|392B3J|1|H|C|40s35
2B3J|1|H|U|392B3J|1|H|U|390BPh


Base-PairsCount (12)Relative Frequency
cWW121.000
Base-PhosphateCount (35)Relative Frequency
1BPh10.029
0BPh340.971
Base-StackingCount (25)Relative Frequency
s3350.200
s53160.640
s5540.160

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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