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NDB ID: AH0020  PDB ID: 2BJ6 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2BJ6|1|E|A|42BJ6|1|E|A|40BPh
2BJ6|1|E|A|42BJ6|1|E|C|3s53
2BJ6|1|E|A|42BJ6|1|E|U|5s35
2BJ6|1|E|A|72BJ6|1|E|A|70BPh
2BJ6|1|E|A|72BJ6|1|E|C|8s35
2BJ6|1|E|A|72BJ6|1|E|U|6s53
2BJ6|1|E|C|32BJ6|1|E|A|4s35
2BJ6|1|E|C|32BJ6|1|E|C|30BPh
2BJ6|1|E|C|32BJ6|1|E|G|2s53
2BJ6|1|E|C|82BJ6|1|E|A|7s53
2BJ6|1|E|C|82BJ6|1|E|C|80BPh
2BJ6|1|E|C|82BJ6|1|E|G|9ns35
2BJ6|1|E|G|12BJ6|1|E|G|10BPh
2BJ6|1|E|G|12BJ6|1|E|G|2s35
2BJ6|1|E|G|12BJ6|1|G|G|1s55
2BJ6|1|E|G|102BJ6|1|E|G|100BPh
2BJ6|1|E|G|102BJ6|1|E|G|9s53
2BJ6|1|E|G|22BJ6|1|E|C|3s35
2BJ6|1|E|G|22BJ6|1|E|G|1s53
2BJ6|1|E|G|22BJ6|1|E|G|20BPh
2BJ6|1|E|G|92BJ6|1|E|C|8ns53
2BJ6|1|E|G|92BJ6|1|E|G|10s35
2BJ6|1|E|G|92BJ6|1|E|G|90BPh
2BJ6|1|E|U|52BJ6|1|E|A|4s53
2BJ6|1|E|U|52BJ6|1|E|U|50BPh
2BJ6|1|E|U|52BJ6|1|E|U|6ns35
2BJ6|1|E|U|62BJ6|1|E|A|7s35
2BJ6|1|E|U|62BJ6|1|E|U|5ns53
2BJ6|1|E|U|62BJ6|1|E|U|60BPh
2BJ6|1|F|A|42BJ6|1|F|A|40BPh
2BJ6|1|F|A|42BJ6|1|F|C|3s53
2BJ6|1|F|A|42BJ6|1|F|U|5s35
2BJ6|1|F|A|72BJ6|1|F|A|70BPh
2BJ6|1|F|A|72BJ6|1|F|C|8s35
2BJ6|1|F|A|72BJ6|1|F|U|6s53
2BJ6|1|F|C|32BJ6|1|F|A|4s35
2BJ6|1|F|C|32BJ6|1|F|C|30BPh
2BJ6|1|F|C|32BJ6|1|F|G|2s53
2BJ6|1|F|C|82BJ6|1|F|A|7s53
2BJ6|1|F|C|82BJ6|1|F|C|8n0BP
2BJ6|1|F|C|82BJ6|1|F|G|9ns35
2BJ6|1|F|G|12BJ6|1|F|G|10BPh
2BJ6|1|F|G|12BJ6|1|F|G|2s35
2BJ6|1|F|G|102BJ6|1|F|G|100BPh
2BJ6|1|F|G|102BJ6|1|F|G|9s53
2BJ6|1|F|G|22BJ6|1|F|C|3s35
2BJ6|1|F|G|22BJ6|1|F|G|1s53
2BJ6|1|F|G|22BJ6|1|F|G|20BPh
2BJ6|1|F|G|92BJ6|1|F|C|8ns53
2BJ6|1|F|G|92BJ6|1|F|G|10s35
2BJ6|1|F|G|92BJ6|1|F|G|90BPh
2BJ6|1|F|U|52BJ6|1|F|A|4s53
2BJ6|1|F|U|52BJ6|1|F|U|50BPh
2BJ6|1|F|U|52BJ6|1|F|U|6s35
2BJ6|1|F|U|62BJ6|1|F|A|7s35
2BJ6|1|F|U|62BJ6|1|F|U|5s53
2BJ6|1|F|U|62BJ6|1|F|U|60BPh
2BJ6|1|G|A|42BJ6|1|G|A|40BPh
2BJ6|1|G|A|42BJ6|1|G|C|3s53
2BJ6|1|G|A|42BJ6|1|G|U|5s35
2BJ6|1|G|A|72BJ6|1|G|A|70BPh
2BJ6|1|G|A|72BJ6|1|G|C|8s35
2BJ6|1|G|A|72BJ6|1|G|U|6s53
2BJ6|1|G|C|32BJ6|1|G|A|4s35
2BJ6|1|G|C|32BJ6|1|G|C|30BPh
2BJ6|1|G|C|32BJ6|1|G|G|2s53
2BJ6|1|G|C|82BJ6|1|G|A|7s53
2BJ6|1|G|C|82BJ6|1|G|C|80BPh
2BJ6|1|G|C|82BJ6|1|G|G|9s35
2BJ6|1|G|G|12BJ6|1|E|G|1s55
2BJ6|1|G|G|12BJ6|1|G|G|10BPh
2BJ6|1|G|G|12BJ6|1|G|G|2s35
2BJ6|1|G|G|102BJ6|1|G|G|100BPh
2BJ6|1|G|G|102BJ6|1|G|G|9s53
2BJ6|1|G|G|22BJ6|1|G|C|3s35
2BJ6|1|G|G|22BJ6|1|G|G|1s53
2BJ6|1|G|G|22BJ6|1|G|G|20BPh
2BJ6|1|G|G|92BJ6|1|G|C|8s53
2BJ6|1|G|G|92BJ6|1|G|G|10s35
2BJ6|1|G|G|92BJ6|1|G|G|90BPh
2BJ6|1|G|U|52BJ6|1|G|A|4s53
2BJ6|1|G|U|52BJ6|1|G|U|50BPh
2BJ6|1|G|U|52BJ6|1|G|U|6s35
2BJ6|1|G|U|62BJ6|1|G|A|7s35
2BJ6|1|G|U|62BJ6|1|G|U|5s53
2BJ6|1|G|U|62BJ6|1|G|U|60BPh
2BJ6|1|H|A|42BJ6|1|H|A|40BPh
2BJ6|1|H|A|42BJ6|1|H|C|3s53
2BJ6|1|H|A|42BJ6|1|H|U|5s35
2BJ6|1|H|A|72BJ6|1|H|A|70BPh
2BJ6|1|H|A|72BJ6|1|H|C|8s35
2BJ6|1|H|A|72BJ6|1|H|U|6s53
2BJ6|1|H|C|32BJ6|1|H|A|4s35
2BJ6|1|H|C|32BJ6|1|H|C|30BPh
2BJ6|1|H|C|32BJ6|1|H|G|2s53
2BJ6|1|H|C|82BJ6|1|H|A|7s53
2BJ6|1|H|C|82BJ6|1|H|C|80BPh
2BJ6|1|H|C|82BJ6|1|H|G|9s35
2BJ6|1|H|G|12BJ6|1|H|G|1n0BP
2BJ6|1|H|G|12BJ6|1|H|G|2s35
2BJ6|1|H|G|102BJ6|1|H|G|100BPh
2BJ6|1|H|G|102BJ6|1|H|G|9s53
2BJ6|1|H|G|22BJ6|1|H|C|3s35
2BJ6|1|H|G|22BJ6|1|H|G|1s53
2BJ6|1|H|G|22BJ6|1|H|G|20BPh
2BJ6|1|H|G|92BJ6|1|H|C|8s53
2BJ6|1|H|G|92BJ6|1|H|G|10s35
2BJ6|1|H|G|92BJ6|1|H|G|90BPh
2BJ6|1|H|U|52BJ6|1|H|A|4s53
2BJ6|1|H|U|52BJ6|1|H|U|50BPh
2BJ6|1|H|U|52BJ6|1|H|U|6s35
2BJ6|1|H|U|62BJ6|1|H|A|7s35
2BJ6|1|H|U|62BJ6|1|H|U|5s53
2BJ6|1|H|U|62BJ6|1|H|U|60BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (38)Relative Frequency
0BPh381.000
Base-StackingCount (17)Relative Frequency
s53160.941
s5510.059

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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