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NDB ID: PR0248  PDB ID: 2BS1 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2BS1|1|R|A|11||||P_12BS1|1|R|A|11||||P_10BPh
2BS1|1|R|A|11||||P_12BS1|1|R|C|9||||P_1s53
2BS1|1|R|A|11||||P_12BS1|1|R|U|10||||P_1n7BP
2BS1|1|R|A|11||||P_P2BS1|1|R|A|11||||P_P0BPh
2BS1|1|R|A|11||||P_P2BS1|1|R|C|9||||P_Ps53
2BS1|1|R|A|11||||P_P2BS1|1|R|U|10||||P_Pn7BP
2BS1|1|R|A|12||||P_12BS1|1|R|A|12||||P_1n0BP
2BS1|1|R|A|12||||P_P2BS1|1|R|A|12||||P_Pn0BP
2BS1|1|R|A|14||||P_12BS1|1|R|A|14||||P_1n0BP
2BS1|1|R|A|14||||P_12BS1|1|R|C|15||||P_1s35
2BS1|1|R|A|14||||P_12BS1|1|R|C|9||||P_1s55
2BS1|1|R|A|14||||P_12BS1|1|R|G|13||||P_1s53
2BS1|1|R|A|14||||P_12BS1|1|R|U|8||||P_1ncWW
2BS1|1|R|A|14||||P_P2BS1|1|R|A|14||||P_Pn0BP
2BS1|1|R|A|14||||P_P2BS1|1|R|C|15||||P_Ps35
2BS1|1|R|A|14||||P_P2BS1|1|R|C|9||||P_Ps55
2BS1|1|R|A|14||||P_P2BS1|1|R|G|13||||P_Ps53
2BS1|1|R|A|14||||P_P2BS1|1|R|U|8||||P_PncWW
2BS1|1|R|A|16||||P_12BS1|1|R|A|16||||P_10BPh
2BS1|1|R|A|16||||P_12BS1|1|R|C|15||||P_1ns53
2BS1|1|R|A|16||||P_12BS1|1|R|G|17||||P_1s35
2BS1|1|R|A|16||||P_12BS1|1|R|G|7||||P_1s55
2BS1|1|R|A|16||||P_12BS1|1|R|U|6||||P_1cWW
2BS1|1|R|A|16||||P_P2BS1|1|R|A|16||||P_P0BPh
2BS1|1|R|A|16||||P_P2BS1|1|R|C|15||||P_Pns53
2BS1|1|R|A|16||||P_P2BS1|1|R|G|17||||P_Ps35
2BS1|1|R|A|16||||P_P2BS1|1|R|G|7||||P_Ps55
2BS1|1|R|A|16||||P_P2BS1|1|R|U|6||||P_PcWW
2BS1|1|R|C|15||||P_12BS1|1|R|A|14||||P_1s53
2BS1|1|R|C|15||||P_12BS1|1|R|A|16||||P_1ns35
2BS1|1|R|C|15||||P_12BS1|1|R|C|15||||P_10BPh
2BS1|1|R|C|15||||P_12BS1|1|R|G|7||||P_1cWW
2BS1|1|R|C|15||||P_P2BS1|1|R|A|14||||P_Ps53
2BS1|1|R|C|15||||P_P2BS1|1|R|A|16||||P_Pns35
2BS1|1|R|C|15||||P_P2BS1|1|R|C|15||||P_P0BPh
2BS1|1|R|C|15||||P_P2BS1|1|R|G|7||||P_PcWW
2BS1|1|R|C|9||||P_12BS1|1|R|A|11||||P_1s35
2BS1|1|R|C|9||||P_12BS1|1|R|A|14||||P_1s55
2BS1|1|R|C|9||||P_12BS1|1|R|C|9||||P_10BPh
2BS1|1|R|C|9||||P_12BS1|1|R|G|13||||P_1cWW
2BS1|1|R|C|9||||P_12BS1|1|R|U|8||||P_1s53
2BS1|1|R|C|9||||P_P2BS1|1|R|A|11||||P_Ps35
2BS1|1|R|C|9||||P_P2BS1|1|R|A|14||||P_Ps55
2BS1|1|R|C|9||||P_P2BS1|1|R|C|9||||P_P0BPh
2BS1|1|R|C|9||||P_P2BS1|1|R|G|13||||P_PcWW
2BS1|1|R|C|9||||P_P2BS1|1|R|U|8||||P_Ps53
2BS1|1|R|G|13||||P_12BS1|1|R|A|14||||P_1s35
2BS1|1|R|G|13||||P_12BS1|1|R|C|9||||P_1cWW
2BS1|1|R|G|13||||P_12BS1|1|R|G|13||||P_1n0BP
2BS1|1|R|G|13||||P_P2BS1|1|R|A|14||||P_Ps35
2BS1|1|R|G|13||||P_P2BS1|1|R|C|9||||P_PcWW
2BS1|1|R|G|13||||P_P2BS1|1|R|G|13||||P_Pn0BP
2BS1|1|R|G|17||||P_12BS1|1|R|A|16||||P_1s53
2BS1|1|R|G|17||||P_12BS1|1|R|G|17||||P_1n0BP
2BS1|1|R|G|17||||P_12BS1|1|R|U|6||||P_1s55
2BS1|1|R|G|17||||P_P2BS1|1|R|A|16||||P_Ps53
2BS1|1|R|G|17||||P_P2BS1|1|R|G|17||||P_Pn0BP
2BS1|1|R|G|17||||P_P2BS1|1|R|U|6||||P_Ps55
2BS1|1|R|G|7||||P_12BS1|1|R|A|16||||P_1s55
2BS1|1|R|G|7||||P_12BS1|1|R|C|15||||P_1cWW
2BS1|1|R|G|7||||P_12BS1|1|R|G|7||||P_10BPh
2BS1|1|R|G|7||||P_12BS1|1|R|U|6||||P_1s53
2BS1|1|R|G|7||||P_12BS1|1|R|U|8||||P_1s35
2BS1|1|R|G|7||||P_P2BS1|1|R|A|16||||P_Ps55
2BS1|1|R|G|7||||P_P2BS1|1|R|C|15||||P_PcWW
2BS1|1|R|G|7||||P_P2BS1|1|R|G|7||||P_P0BPh
2BS1|1|R|G|7||||P_P2BS1|1|R|U|6||||P_Ps53
2BS1|1|R|G|7||||P_P2BS1|1|R|U|8||||P_Ps35
2BS1|1|R|U|10||||P_12BS1|1|R|C|9||||P_1
2BS1|1|R|U|10||||P_12BS1|1|R|U|10||||P_10BPh
2BS1|1|R|U|10||||P_P2BS1|1|R|C|9||||P_P
2BS1|1|R|U|10||||P_P2BS1|1|R|U|10||||P_P0BPh
2BS1|1|R|U|6||||P_12BS1|1|R|A|16||||P_1cWW
2BS1|1|R|U|6||||P_12BS1|1|R|G|17||||P_1s55
2BS1|1|R|U|6||||P_12BS1|1|R|G|7||||P_1s35
2BS1|1|R|U|6||||P_12BS1|1|R|U|6||||P_10BPh
2BS1|1|R|U|6||||P_P2BS1|1|R|A|16||||P_PcWW
2BS1|1|R|U|6||||P_P2BS1|1|R|G|17||||P_Ps55
2BS1|1|R|U|6||||P_P2BS1|1|R|G|7||||P_Ps35
2BS1|1|R|U|6||||P_P2BS1|1|R|U|6||||P_P0BPh
2BS1|1|R|U|8||||P_12BS1|1|R|A|14||||P_1ncWW
2BS1|1|R|U|8||||P_12BS1|1|R|C|9||||P_1s35
2BS1|1|R|U|8||||P_12BS1|1|R|G|7||||P_1s53
2BS1|1|R|U|8||||P_12BS1|1|R|U|8||||P_10BPh
2BS1|1|R|U|8||||P_P2BS1|1|R|A|14||||P_PncWW
2BS1|1|R|U|8||||P_P2BS1|1|R|C|9||||P_Ps35
2BS1|1|R|U|8||||P_P2BS1|1|R|G|7||||P_Ps53
2BS1|1|R|U|8||||P_P2BS1|1|R|U|8||||P_P0BPh
2BS1|1|S|A|11||||P_12BS1|1|S|A|11||||P_1n0BP
2BS1|1|S|A|11||||P_12BS1|1|S|C|9||||P_1s53
2BS1|1|S|A|11||||P_12BS1|1|S|G|13||||P_1ns55
2BS1|1|S|A|11||||P_12BS1|1|S|U|10||||P_17BPh
2BS1|1|S|A|11||||P_P2BS1|1|S|A|11||||P_Pn0BP
2BS1|1|S|A|11||||P_P2BS1|1|S|C|9||||P_Ps53
2BS1|1|S|A|11||||P_P2BS1|1|S|G|13||||P_Pns55
2BS1|1|S|A|11||||P_P2BS1|1|S|U|10||||P_P7BPh
2BS1|1|S|A|12||||P_12BS1|1|S|A|12||||P_1n0BP
2BS1|1|S|A|12||||P_P2BS1|1|S|A|12||||P_Pn0BP
2BS1|1|S|A|14||||P_12BS1|1|S|A|14||||P_1n0BP
2BS1|1|S|A|14||||P_12BS1|1|S|C|15||||P_1s35
2BS1|1|S|A|14||||P_12BS1|1|S|C|9||||P_1s55
2BS1|1|S|A|14||||P_12BS1|1|S|G|13||||P_1s53
2BS1|1|S|A|14||||P_12BS1|1|S|U|8||||P_1cWW
2BS1|1|S|A|14||||P_P2BS1|1|S|A|14||||P_Pn0BP
2BS1|1|S|A|14||||P_P2BS1|1|S|C|15||||P_Ps35
2BS1|1|S|A|14||||P_P2BS1|1|S|C|9||||P_Ps55
2BS1|1|S|A|14||||P_P2BS1|1|S|G|13||||P_Ps53
2BS1|1|S|A|14||||P_P2BS1|1|S|U|8||||P_PcWW
2BS1|1|S|A|16||||P_12BS1|1|S|C|15||||P_1ns53
2BS1|1|S|A|16||||P_12BS1|1|S|G|7||||P_1s55
2BS1|1|S|A|16||||P_12BS1|1|S|U|6||||P_1cWW
2BS1|1|S|A|16||||P_P2BS1|1|S|C|15||||P_Pns53
2BS1|1|S|A|16||||P_P2BS1|1|S|G|7||||P_Ps55
2BS1|1|S|A|16||||P_P2BS1|1|S|U|6||||P_PcWW
2BS1|1|S|C|15||||P_12BS1|1|S|A|14||||P_1s53
2BS1|1|S|C|15||||P_12BS1|1|S|A|16||||P_1ns35
2BS1|1|S|C|15||||P_12BS1|1|S|C|15||||P_1n0BP
2BS1|1|S|C|15||||P_12BS1|1|S|G|7||||P_1cWW
2BS1|1|S|C|15||||P_P2BS1|1|S|A|14||||P_Ps53
2BS1|1|S|C|15||||P_P2BS1|1|S|A|16||||P_Pns35
2BS1|1|S|C|15||||P_P2BS1|1|S|C|15||||P_Pn0BP
2BS1|1|S|C|15||||P_P2BS1|1|S|G|7||||P_PcWW
2BS1|1|S|C|9||||P_12BS1|1|S|A|11||||P_1s35
2BS1|1|S|C|9||||P_12BS1|1|S|A|14||||P_1s55
2BS1|1|S|C|9||||P_12BS1|1|S|C|9||||P_10BPh
2BS1|1|S|C|9||||P_12BS1|1|S|G|13||||P_1cWW
2BS1|1|S|C|9||||P_12BS1|1|S|U|8||||P_1s53
2BS1|1|S|C|9||||P_P2BS1|1|S|A|11||||P_Ps35
2BS1|1|S|C|9||||P_P2BS1|1|S|A|14||||P_Ps55
2BS1|1|S|C|9||||P_P2BS1|1|S|C|9||||P_P0BPh
2BS1|1|S|C|9||||P_P2BS1|1|S|G|13||||P_PcWW
2BS1|1|S|C|9||||P_P2BS1|1|S|U|8||||P_Ps53
2BS1|1|S|G|13||||P_12BS1|1|S|A|11||||P_1ns55
2BS1|1|S|G|13||||P_12BS1|1|S|A|14||||P_1s35
2BS1|1|S|G|13||||P_12BS1|1|S|C|9||||P_1cWW
2BS1|1|S|G|13||||P_12BS1|1|S|G|13||||P_1n0BP
2BS1|1|S|G|13||||P_P2BS1|1|S|A|11||||P_Pns55
2BS1|1|S|G|13||||P_P2BS1|1|S|A|14||||P_Ps35
2BS1|1|S|G|13||||P_P2BS1|1|S|C|9||||P_PcWW
2BS1|1|S|G|13||||P_P2BS1|1|S|G|13||||P_Pn0BP
2BS1|1|S|G|7||||P_12BS1|1|S|A|16||||P_1s55
2BS1|1|S|G|7||||P_12BS1|1|S|C|15||||P_1cWW
2BS1|1|S|G|7||||P_12BS1|1|S|U|6||||P_1s53n0BP
2BS1|1|S|G|7||||P_12BS1|1|S|U|8||||P_1s35
2BS1|1|S|G|7||||P_P2BS1|1|S|A|16||||P_Ps55
2BS1|1|S|G|7||||P_P2BS1|1|S|C|15||||P_PcWW
2BS1|1|S|G|7||||P_P2BS1|1|S|U|6||||P_Ps53n0BP
2BS1|1|S|G|7||||P_P2BS1|1|S|U|8||||P_Ps35
2BS1|1|S|U|10||||P_12BS1|1|S|U|10||||P_10BPh
2BS1|1|S|U|10||||P_P2BS1|1|S|U|10||||P_P0BPh
2BS1|1|S|U|6||||P_12BS1|1|S|A|16||||P_1cWW
2BS1|1|S|U|6||||P_12BS1|1|S|G|7||||P_1s35
2BS1|1|S|U|6||||P_12BS1|1|S|U|6||||P_10BPh
2BS1|1|S|U|6||||P_P2BS1|1|S|A|16||||P_PcWW
2BS1|1|S|U|6||||P_P2BS1|1|S|G|7||||P_Ps35
2BS1|1|S|U|6||||P_P2BS1|1|S|U|6||||P_P0BPh
2BS1|1|S|U|8||||P_12BS1|1|S|A|14||||P_1cWW
2BS1|1|S|U|8||||P_12BS1|1|S|C|9||||P_1s35
2BS1|1|S|U|8||||P_12BS1|1|S|G|7||||P_1s53
2BS1|1|S|U|8||||P_12BS1|1|S|U|8||||P_10BPh
2BS1|1|S|U|8||||P_P2BS1|1|S|A|14||||P_PcWW
2BS1|1|S|U|8||||P_P2BS1|1|S|C|9||||P_Ps35
2BS1|1|S|U|8||||P_P2BS1|1|S|G|7||||P_Ps53
2BS1|1|S|U|8||||P_P2BS1|1|S|U|8||||P_P0BPh


Base-PairsCount (14)Relative Frequency
cWW141.000
Base-PhosphateCount (26)Relative Frequency
7BPh20.077
0BPh240.923
Base-StackingCount (26)Relative Frequency
s53160.615
s55100.385

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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