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NDB ID: AH0024  PDB ID: 2DQQ 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2DQQ|1|B|A|112DQQ|1|B|A|110BPh
2DQQ|1|B|A|112DQQ|1|B|A|12s35
2DQQ|1|B|A|112DQQ|1|B|G|10s53
2DQQ|1|B|A|122DQQ|1|B|A|11s53
2DQQ|1|B|A|122DQQ|1|B|A|120BPh
2DQQ|1|B|A|122DQQ|1|B|G|13s35
2DQQ|1|B|A|142DQQ|1|B|A|140BPh
2DQQ|1|B|A|142DQQ|1|B|A|15s35
2DQQ|1|B|A|142DQQ|1|B|G|13s53
2DQQ|1|B|A|152DQQ|1|B|A|14s53
2DQQ|1|B|A|152DQQ|1|B|A|150BPh
2DQQ|1|B|A|152DQQ|1|B|G|16s35
2DQQ|1|B|A|172DQQ|1|B|A|170BPh
2DQQ|1|B|A|172DQQ|1|B|G|16s53
2DQQ|1|B|A|172DQQ|1|B|G|18s35
2DQQ|1|B|G|102DQQ|1|B|A|11s35
2DQQ|1|B|G|102DQQ|1|B|G|10n0BP
2DQQ|1|B|G|132DQQ|1|B|A|12s53
2DQQ|1|B|G|132DQQ|1|B|A|14s35
2DQQ|1|B|G|132DQQ|1|B|G|130BPh
2DQQ|1|B|G|162DQQ|1|B|A|15s53
2DQQ|1|B|G|162DQQ|1|B|A|17s35
2DQQ|1|B|G|162DQQ|1|B|G|160BPh
2DQQ|1|B|G|182DQQ|1|B|A|17s53
2DQQ|1|B|G|182DQQ|1|B|G|18n0BP


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (7)Relative Frequency
0BPh71.000
Base-StackingCount (3)Relative Frequency
s5331.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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