A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: PR0212  PDB ID: 2DR2 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2DR2|1|B|A|142DR2|1|B|A|21cWS
2DR2|1|B|A|142DR2|1|B|G|22s55
2DR2|1|B|A|14||||8_6662DR2|1|B|A|21||||8_666cWS
2DR2|1|B|A|14||||8_6662DR2|1|B|G|22||||8_666s55
2DR2|1|B|A|152DR2|1|B|U|60
2DR2|1|B|A|15||||8_6662DR2|1|B|U|60||||8_666
2DR2|1|B|A|22DR2|1|B|A|20BPh
2DR2|1|B|A|22DR2|1|B|C|3s35
2DR2|1|B|A|22DR2|1|B|C|72ns55
2DR2|1|B|A|22DR2|1|B|G|1s53
2DR2|1|B|A|22DR2|1|B|U|71cWW
2DR2|1|B|A|212DR2|1|B|A|14cSW
2DR2|1|B|A|212DR2|1|B|A|21n0BP
2DR2|1|B|A|212DR2|1|B|U|47
2DR2|1|B|A|212DR2|1|B|U|48n2BP
2DR2|1|B|A|21||||8_6662DR2|1|B|A|14||||8_666cSW
2DR2|1|B|A|21||||8_6662DR2|1|B|A|21||||8_666n0BP
2DR2|1|B|A|21||||8_6662DR2|1|B|U|47||||8_666
2DR2|1|B|A|21||||8_6662DR2|1|B|U|48||||8_666n2BP
2DR2|1|B|A|2||||8_6662DR2|1|B|A|2||||8_6660BPh
2DR2|1|B|A|2||||8_6662DR2|1|B|C|3||||8_666s35
2DR2|1|B|A|2||||8_6662DR2|1|B|C|72||||8_666ns55
2DR2|1|B|A|2||||8_6662DR2|1|B|G|1||||8_666s53
2DR2|1|B|A|2||||8_6662DR2|1|B|U|71||||8_666cWW
2DR2|1|B|A|312DR2|1|B|A|310BPh
2DR2|1|B|A|312DR2|1|B|C|32s35
2DR2|1|B|A|312DR2|1|B|G|30s53
2DR2|1|B|A|312DR2|1|B|U|39cWW
2DR2|1|B|A|31||||8_6662DR2|1|B|A|31||||8_6660BPh
2DR2|1|B|A|31||||8_6662DR2|1|B|C|32||||8_666s35
2DR2|1|B|A|31||||8_6662DR2|1|B|G|30||||8_666s53
2DR2|1|B|A|31||||8_6662DR2|1|B|U|39||||8_666cWW
2DR2|1|B|A|362DR2|1|B|A|360BPh
2DR2|1|B|A|362DR2|1|B|C|35s53
2DR2|1|B|A|362DR2|1|B|G|37s35
2DR2|1|B|A|36||||8_6662DR2|1|B|A|36||||8_6660BPh
2DR2|1|B|A|36||||8_6662DR2|1|B|C|35||||8_666s53
2DR2|1|B|A|36||||8_6662DR2|1|B|G|37||||8_666s35
2DR2|1|B|A|382DR2|1|B|A|382BPh
2DR2|1|B|A|382DR2|1|B|C|32ntWW
2DR2|1|B|A|382DR2|1|B|G|37s33
2DR2|1|B|A|382DR2|1|B|U|39s55
2DR2|1|B|A|38||||8_6662DR2|1|B|A|38||||8_6662BPh
2DR2|1|B|A|38||||8_6662DR2|1|B|C|32||||8_666ntWW
2DR2|1|B|A|38||||8_6662DR2|1|B|G|37||||8_666s33
2DR2|1|B|A|38||||8_6662DR2|1|B|U|39||||8_666s55
2DR2|1|B|A|412DR2|1|B|A|410BPh
2DR2|1|B|A|412DR2|1|B|C|40s53
2DR2|1|B|A|412DR2|1|B|G|30s55
2DR2|1|B|A|412DR2|1|B|G|42s35
2DR2|1|B|A|412DR2|1|B|U|29cWW
2DR2|1|B|A|41||||8_6662DR2|1|B|A|41||||8_6660BPh
2DR2|1|B|A|41||||8_6662DR2|1|B|C|40||||8_666s53
2DR2|1|B|A|41||||8_6662DR2|1|B|G|30||||8_666s55
2DR2|1|B|A|41||||8_6662DR2|1|B|G|42||||8_666s35
2DR2|1|B|A|41||||8_6662DR2|1|B|U|29||||8_666cWW
2DR2|1|B|A|432DR2|1|B|A|430BPh
2DR2|1|B|A|432DR2|1|B|A|44s35
2DR2|1|B|A|432DR2|1|B|C|28ns55
2DR2|1|B|A|432DR2|1|B|G|42s53
2DR2|1|B|A|432DR2|1|B|U|27cWW
2DR2|1|B|A|43||||8_6662DR2|1|B|A|43||||8_6660BPh
2DR2|1|B|A|43||||8_6662DR2|1|B|A|44||||8_666s35
2DR2|1|B|A|43||||8_6662DR2|1|B|C|28||||8_666ns55
2DR2|1|B|A|43||||8_6662DR2|1|B|G|42||||8_666s53
2DR2|1|B|A|43||||8_6662DR2|1|B|U|27||||8_666cWW
2DR2|1|B|A|442DR2|1|B|A|43s53
2DR2|1|B|A|442DR2|1|B|A|440BPh
2DR2|1|B|A|442DR2|1|B|G|26ncWW
2DR2|1|B|A|442DR2|1|B|G|45
2DR2|1|B|A|442DR2|1|B|U|27ns55
2DR2|1|B|A|44||||8_6662DR2|1|B|A|43||||8_666s53
2DR2|1|B|A|44||||8_6662DR2|1|B|A|44||||8_6660BPh
2DR2|1|B|A|44||||8_6662DR2|1|B|G|26||||8_666ncWW
2DR2|1|B|A|44||||8_6662DR2|1|B|G|45||||8_666
2DR2|1|B|A|44||||8_6662DR2|1|B|U|27||||8_666ns55
2DR2|1|B|A|582DR2|1|B|A|580BPh
2DR2|1|B|A|582DR2|1|B|C|61s35
2DR2|1|B|A|582DR2|1|B|U|54ntHW
2DR2|1|B|A|58||||8_6662DR2|1|B|A|58||||8_6660BPh
2DR2|1|B|A|58||||8_6662DR2|1|B|C|61||||8_666s35
2DR2|1|B|A|58||||8_6662DR2|1|B|U|54||||8_666ntHW
2DR2|1|B|A|592DR2|1|B|U|48n2BP
2DR2|1|B|A|592DR2|1|B|U|60
2DR2|1|B|A|59||||8_6662DR2|1|B|U|48||||8_666n2BP
2DR2|1|B|A|59||||8_6662DR2|1|B|U|60||||8_666
2DR2|1|B|A|622DR2|1|B|A|620BPh
2DR2|1|B|A|622DR2|1|B|C|61ns53
2DR2|1|B|A|622DR2|1|B|C|63s35
2DR2|1|B|A|622DR2|1|B|G|53s55
2DR2|1|B|A|622DR2|1|B|U|52cWW
2DR2|1|B|A|62||||8_6662DR2|1|B|A|62||||8_6660BPh
2DR2|1|B|A|62||||8_6662DR2|1|B|C|61||||8_666ns53
2DR2|1|B|A|62||||8_6662DR2|1|B|C|63||||8_666s35
2DR2|1|B|A|62||||8_6662DR2|1|B|G|53||||8_666s55
2DR2|1|B|A|62||||8_6662DR2|1|B|U|52||||8_666cWW
2DR2|1|B|A|732DR2|1|B|A|73n0BP
2DR2|1|B|A|73||||8_6662DR2|1|B|A|73||||8_666n0BP
2DR2|1|B|A|762DR2|1|B|C|75ns53
2DR2|1|B|A|76||||8_6662DR2|1|B|C|75||||8_666ns53
2DR2|1|B|C|112DR2|1|B|C|110BPh
2DR2|1|B|C|112DR2|1|B|C|23
2DR2|1|B|C|112DR2|1|B|G|10s53n9BP
2DR2|1|B|C|112DR2|1|B|G|12s35
2DR2|1|B|C|112DR2|1|B|G|24ntWH
2DR2|1|B|C|11||||8_6662DR2|1|B|C|11||||8_6660BPh
2DR2|1|B|C|11||||8_6662DR2|1|B|C|23||||8_666
2DR2|1|B|C|11||||8_6662DR2|1|B|G|10||||8_666s53n9BP
2DR2|1|B|C|11||||8_6662DR2|1|B|G|12||||8_666s35
2DR2|1|B|C|11||||8_6662DR2|1|B|G|24||||8_666ntWH
2DR2|1|B|C|132DR2|1|B|C|13n0BP
2DR2|1|B|C|132DR2|1|B|G|12s53
2DR2|1|B|C|132DR2|1|B|G|22cWW
2DR2|1|B|C|132DR2|1|B|U|8
2DR2|1|B|C|13||||8_6662DR2|1|B|C|13||||8_666n0BP
2DR2|1|B|C|13||||8_6662DR2|1|B|G|12||||8_666s53
2DR2|1|B|C|13||||8_6662DR2|1|B|G|22||||8_666cWW
2DR2|1|B|C|13||||8_6662DR2|1|B|U|8||||8_666
2DR2|1|B|C|232DR2|1|B|C|11
2DR2|1|B|C|232DR2|1|B|C|230BPh
2DR2|1|B|C|232DR2|1|B|G|12ncWW
2DR2|1|B|C|232DR2|1|B|G|22ns53
2DR2|1|B|C|232DR2|1|B|G|9s53
2DR2|1|B|C|23||||8_6662DR2|1|B|C|11||||8_666
2DR2|1|B|C|23||||8_6662DR2|1|B|C|23||||8_6660BPh
2DR2|1|B|C|23||||8_6662DR2|1|B|G|12||||8_666ncWW
2DR2|1|B|C|23||||8_6662DR2|1|B|G|22||||8_666ns53
2DR2|1|B|C|23||||8_6662DR2|1|B|G|9||||8_666s53
2DR2|1|B|C|252DR2|1|B|C|250BPh
2DR2|1|B|C|252DR2|1|B|G|10cWW
2DR2|1|B|C|252DR2|1|B|G|24s53n9BP
2DR2|1|B|C|252DR2|1|B|G|26s35
2DR2|1|B|C|25||||8_6662DR2|1|B|C|25||||8_6660BPh
2DR2|1|B|C|25||||8_6662DR2|1|B|G|10||||8_666cWW
2DR2|1|B|C|25||||8_6662DR2|1|B|G|24||||8_666s53n9BP
2DR2|1|B|C|25||||8_6662DR2|1|B|G|26||||8_666s35
2DR2|1|B|C|282DR2|1|B|A|43ns55
2DR2|1|B|C|282DR2|1|B|C|280BPh
2DR2|1|B|C|282DR2|1|B|G|42cWW
2DR2|1|B|C|282DR2|1|B|U|27s53
2DR2|1|B|C|282DR2|1|B|U|29s35
2DR2|1|B|C|28||||8_6662DR2|1|B|A|43||||8_666ns55
2DR2|1|B|C|28||||8_6662DR2|1|B|C|28||||8_6660BPh
2DR2|1|B|C|28||||8_6662DR2|1|B|G|42||||8_666cWW
2DR2|1|B|C|28||||8_6662DR2|1|B|U|27||||8_666s53
2DR2|1|B|C|28||||8_6662DR2|1|B|U|29||||8_666s35
2DR2|1|B|C|32DR2|1|B|A|2s53
2DR2|1|B|C|32DR2|1|B|C|30BPh
2DR2|1|B|C|32DR2|1|B|C|4s35
2DR2|1|B|C|32DR2|1|B|G|70cWW
2DR2|1|B|C|322DR2|1|B|A|31s53
2DR2|1|B|C|322DR2|1|B|A|38ntWW
2DR2|1|B|C|322DR2|1|B|C|320BPh
2DR2|1|B|C|322DR2|1|B|U|33s35
2DR2|1|B|C|32||||8_6662DR2|1|B|A|31||||8_666s53
2DR2|1|B|C|32||||8_6662DR2|1|B|A|38||||8_666ntWW
2DR2|1|B|C|32||||8_6662DR2|1|B|C|32||||8_6660BPh
2DR2|1|B|C|32||||8_6662DR2|1|B|U|33||||8_666s35
2DR2|1|B|C|342DR2|1|B|C|340BPh
2DR2|1|B|C|342DR2|1|B|C|35s35
2DR2|1|B|C|34||||8_6662DR2|1|B|C|34||||8_6660BPh
2DR2|1|B|C|34||||8_6662DR2|1|B|C|35||||8_666s35
2DR2|1|B|C|352DR2|1|B|A|36s35
2DR2|1|B|C|352DR2|1|B|C|34s53
2DR2|1|B|C|352DR2|1|B|C|350BPh
2DR2|1|B|C|35||||8_6662DR2|1|B|A|36||||8_666s35
2DR2|1|B|C|35||||8_6662DR2|1|B|C|34||||8_666s53
2DR2|1|B|C|35||||8_6662DR2|1|B|C|35||||8_6660BPh
2DR2|1|B|C|3||||8_6662DR2|1|B|A|2||||8_666s53
2DR2|1|B|C|3||||8_6662DR2|1|B|C|3||||8_6660BPh
2DR2|1|B|C|3||||8_6662DR2|1|B|C|4||||8_666s35
2DR2|1|B|C|3||||8_6662DR2|1|B|G|70||||8_666cWW
2DR2|1|B|C|42DR2|1|B|C|3s53
2DR2|1|B|C|42DR2|1|B|C|40BPh
2DR2|1|B|C|42DR2|1|B|G|69cWW
2DR2|1|B|C|42DR2|1|B|G|70s55
2DR2|1|B|C|42DR2|1|B|U|5s35
2DR2|1|B|C|402DR2|1|B|A|41s35
2DR2|1|B|C|402DR2|1|B|C|400BPh
2DR2|1|B|C|402DR2|1|B|G|30cWW
2DR2|1|B|C|402DR2|1|B|U|39s53
2DR2|1|B|C|40||||8_6662DR2|1|B|A|41||||8_666s35
2DR2|1|B|C|40||||8_6662DR2|1|B|C|40||||8_6660BPh
2DR2|1|B|C|40||||8_6662DR2|1|B|G|30||||8_666cWW
2DR2|1|B|C|40||||8_6662DR2|1|B|U|39||||8_666s53
2DR2|1|B|C|4||||8_6662DR2|1|B|C|3||||8_666s53
2DR2|1|B|C|4||||8_6662DR2|1|B|C|4||||8_6660BPh
2DR2|1|B|C|4||||8_6662DR2|1|B|G|69||||8_666cWW
2DR2|1|B|C|4||||8_6662DR2|1|B|G|70||||8_666s55
2DR2|1|B|C|4||||8_6662DR2|1|B|U|5||||8_666s35
2DR2|1|B|C|502DR2|1|B|C|50n0BP
2DR2|1|B|C|502DR2|1|B|G|49s53
2DR2|1|B|C|502DR2|1|B|G|51s35
2DR2|1|B|C|502DR2|1|B|G|64cWW
2DR2|1|B|C|50||||8_6662DR2|1|B|C|50||||8_666n0BP
2DR2|1|B|C|50||||8_6662DR2|1|B|G|49||||8_666s53
2DR2|1|B|C|50||||8_6662DR2|1|B|G|51||||8_666s35
2DR2|1|B|C|50||||8_6662DR2|1|B|G|64||||8_666cWW
2DR2|1|B|C|562DR2|1|B|C|56n0BP
2DR2|1|B|C|562DR2|1|B|G|57s35
2DR2|1|B|C|56||||8_6662DR2|1|B|C|56||||8_666n0BP
2DR2|1|B|C|56||||8_6662DR2|1|B|G|57||||8_666s35
2DR2|1|B|C|62DR2|1|B|C|60BPh
2DR2|1|B|C|62DR2|1|B|G|67cWW
2DR2|1|B|C|62DR2|1|B|G|68s55
2DR2|1|B|C|62DR2|1|B|G|7s35
2DR2|1|B|C|62DR2|1|B|U|5s53
2DR2|1|B|C|612DR2|1|B|A|58s53
2DR2|1|B|C|612DR2|1|B|A|62ns35
2DR2|1|B|C|612DR2|1|B|C|610BPh
2DR2|1|B|C|612DR2|1|B|G|53cWW
2DR2|1|B|C|612DR2|1|B|U|608BPh
2DR2|1|B|C|61||||8_6662DR2|1|B|A|58||||8_666s53
2DR2|1|B|C|61||||8_6662DR2|1|B|A|62||||8_666ns35
2DR2|1|B|C|61||||8_6662DR2|1|B|C|61||||8_6660BPh
2DR2|1|B|C|61||||8_6662DR2|1|B|G|53||||8_666cWW
2DR2|1|B|C|61||||8_6662DR2|1|B|U|60||||8_6668BPh
2DR2|1|B|C|632DR2|1|B|A|62s53
2DR2|1|B|C|632DR2|1|B|C|630BPh
2DR2|1|B|C|632DR2|1|B|G|51cWW
2DR2|1|B|C|632DR2|1|B|G|64s35
2DR2|1|B|C|63||||8_6662DR2|1|B|A|62||||8_666s53
2DR2|1|B|C|63||||8_6662DR2|1|B|C|63||||8_6660BPh
2DR2|1|B|C|63||||8_6662DR2|1|B|G|51||||8_666cWW
2DR2|1|B|C|63||||8_6662DR2|1|B|G|64||||8_666s35
2DR2|1|B|C|662DR2|1|B|C|660BPh
2DR2|1|B|C|662DR2|1|B|G|49s55
2DR2|1|B|C|662DR2|1|B|G|67s35
2DR2|1|B|C|662DR2|1|B|G|7cWW
2DR2|1|B|C|662DR2|1|B|U|65s53
2DR2|1|B|C|66||||8_6662DR2|1|B|C|66||||8_6660BPh
2DR2|1|B|C|66||||8_6662DR2|1|B|G|49||||8_666s55
2DR2|1|B|C|66||||8_6662DR2|1|B|G|67||||8_666s35
2DR2|1|B|C|66||||8_6662DR2|1|B|G|7||||8_666cWW
2DR2|1|B|C|66||||8_6662DR2|1|B|U|65||||8_666s53
2DR2|1|B|C|6||||8_6662DR2|1|B|C|6||||8_6660BPh
2DR2|1|B|C|6||||8_6662DR2|1|B|G|67||||8_666cWW
2DR2|1|B|C|6||||8_6662DR2|1|B|G|68||||8_666s55
2DR2|1|B|C|6||||8_6662DR2|1|B|G|7||||8_666s35
2DR2|1|B|C|6||||8_6662DR2|1|B|U|5||||8_666s53
2DR2|1|B|C|722DR2|1|B|A|2ns55
2DR2|1|B|C|722DR2|1|B|C|720BPh
2DR2|1|B|C|722DR2|1|B|G|1cWW
2DR2|1|B|C|722DR2|1|B|U|71s53
2DR2|1|B|C|72||||8_6662DR2|1|B|A|2||||8_666ns55
2DR2|1|B|C|72||||8_6662DR2|1|B|C|72||||8_6660BPh
2DR2|1|B|C|72||||8_6662DR2|1|B|G|1||||8_666cWW
2DR2|1|B|C|72||||8_6662DR2|1|B|U|71||||8_666s53
2DR2|1|B|C|752DR2|1|B|A|76ns35
2DR2|1|B|C|752DR2|1|B|C|74
2DR2|1|B|C|752DR2|1|B|C|75n0BP
2DR2|1|B|C|75||||8_6662DR2|1|B|A|76||||8_666ns35
2DR2|1|B|C|75||||8_6662DR2|1|B|C|74||||8_666
2DR2|1|B|C|75||||8_6662DR2|1|B|C|75||||8_666n0BP
2DR2|1|B|G|12DR2|1|B|A|2s35
2DR2|1|B|G|12DR2|1|B|C|72cWW
2DR2|1|B|G|102DR2|1|B|C|11s35
2DR2|1|B|G|102DR2|1|B|C|25cWW
2DR2|1|B|G|102DR2|1|B|G|100BPh
2DR2|1|B|G|102DR2|1|B|G|26s55
2DR2|1|B|G|10||||8_6662DR2|1|B|C|11||||8_666s35
2DR2|1|B|G|10||||8_6662DR2|1|B|C|25||||8_666cWW
2DR2|1|B|G|10||||8_6662DR2|1|B|G|10||||8_6660BPh
2DR2|1|B|G|10||||8_6662DR2|1|B|G|26||||8_666s55
2DR2|1|B|G|122DR2|1|B|C|11s53
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2DR2|1|B|U|5||||8_6662DR2|1|B|G|68||||8_666cWW
2DR2|1|B|U|5||||8_6662DR2|1|B|G|69||||8_666s55
2DR2|1|B|U|5||||8_6662DR2|1|B|U|5||||8_6660BPh
2DR2|1|B|U|602DR2|1|B|A|58
2DR2|1|B|U|602DR2|1|B|A|59
2DR2|1|B|U|602DR2|1|B|U|600BPh
2DR2|1|B|U|60||||8_6662DR2|1|B|A|58||||8_666
2DR2|1|B|U|60||||8_6662DR2|1|B|A|59||||8_666
2DR2|1|B|U|60||||8_6662DR2|1|B|U|60||||8_6660BPh
2DR2|1|B|U|652DR2|1|B|C|66s35
2DR2|1|B|U|652DR2|1|B|G|49cWW
2DR2|1|B|U|652DR2|1|B|G|64s53
2DR2|1|B|U|652DR2|1|B|U|650BPh
2DR2|1|B|U|65||||8_6662DR2|1|B|C|66||||8_666s35
2DR2|1|B|U|65||||8_6662DR2|1|B|G|49||||8_666cWW
2DR2|1|B|U|65||||8_6662DR2|1|B|G|64||||8_666s53
2DR2|1|B|U|65||||8_6662DR2|1|B|U|65||||8_6660BPh
2DR2|1|B|U|712DR2|1|B|A|2cWW
2DR2|1|B|U|712DR2|1|B|C|72s35
2DR2|1|B|U|712DR2|1|B|G|70s53
2DR2|1|B|U|712DR2|1|B|U|710BPh
2DR2|1|B|U|71||||8_6662DR2|1|B|A|2||||8_666cWW
2DR2|1|B|U|71||||8_6662DR2|1|B|C|72||||8_666s35
2DR2|1|B|U|71||||8_6662DR2|1|B|G|70||||8_666s53
2DR2|1|B|U|71||||8_6662DR2|1|B|U|71||||8_6660BPh
2DR2|1|B|U|82DR2|1|B|C|13
2DR2|1|B|U|82DR2|1|B|G|12
2DR2|1|B|U|82DR2|1|B|G|9
2DR2|1|B|U|82DR2|1|B|U|8n0BP
2DR2|1|B|U|8||||8_6662DR2|1|B|C|13||||8_666
2DR2|1|B|U|8||||8_6662DR2|1|B|G|12||||8_666
2DR2|1|B|U|8||||8_6662DR2|1|B|G|9||||8_666
2DR2|1|B|U|8||||8_6662DR2|1|B|U|8||||8_666n0BP


Base-PairsCount (40)Relative Frequency
cWW380.950
cWS20.050
Base-PhosphateCount (106)Relative Frequency
2BPh20.019
5BPh40.038
8BPh20.019
0BPh980.925
Base-StackingCount (62)Relative Frequency
s3320.032
s53360.581
s55240.387

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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