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NDB ID: 2F87  PDB ID: 2F87 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2F87|1|A|A|62F87|1|A|A|60BPh
2F87|1|A|A|62F87|1|A|A|7s35
2F87|1|A|A|72F87|1|A|A|6s53
2F87|1|A|A|72F87|1|A|A|70BPh
2F87|1|A|A|72F87|1|A|G|5ns33
2F87|1|A|A|72F87|1|A|G|8s35
2F87|1|A|C|112F87|1|A|C|110BPh
2F87|1|A|C|112F87|1|A|C|12s35
2F87|1|A|C|112F87|1|A|G|10s53
2F87|1|A|C|112F87|1|A|G|2cWW
2F87|1|A|C|122F87|1|A|C|11s53
2F87|1|A|C|122F87|1|A|C|120BPh
2F87|1|A|C|122F87|1|A|G|1cWW
2F87|1|A|C|122F87|1|A|G|2s55
2F87|1|A|C|32F87|1|A|C|30BPh
2F87|1|A|C|32F87|1|A|G|10cWW
2F87|1|A|C|32F87|1|A|G|2s53
2F87|1|A|C|32F87|1|A|U|4s35
2F87|1|A|G|12F87|1|A|C|12cWW
2F87|1|A|G|12F87|1|A|G|1n0BP
2F87|1|A|G|12F87|1|A|G|2s35
2F87|1|A|G|102F87|1|A|C|11s35
2F87|1|A|G|102F87|1|A|C|3cWW
2F87|1|A|G|102F87|1|A|G|100BPh
2F87|1|A|G|102F87|1|A|G|9s53
2F87|1|A|G|102F87|1|A|U|4s55
2F87|1|A|G|22F87|1|A|C|11cWW
2F87|1|A|G|22F87|1|A|C|12s55
2F87|1|A|G|22F87|1|A|C|3s35
2F87|1|A|G|22F87|1|A|G|1s53
2F87|1|A|G|22F87|1|A|G|2n0BP
2F87|1|A|G|52F87|1|A|A|7ns33
2F87|1|A|G|52F87|1|A|G|8ntSH3BPh
2F87|1|A|G|52F87|1|A|G|9ns55
2F87|1|A|G|52F87|1|A|U|4s53
2F87|1|A|G|82F87|1|A|A|7s53
2F87|1|A|G|82F87|1|A|G|5ntHS
2F87|1|A|G|82F87|1|A|G|8n0BP
2F87|1|A|G|82F87|1|A|G|9s35
2F87|1|A|G|92F87|1|A|G|10s35
2F87|1|A|G|92F87|1|A|G|5ns55
2F87|1|A|G|92F87|1|A|G|8s53
2F87|1|A|G|92F87|1|A|U|4cWW
2F87|1|A|U|42F87|1|A|C|3s53
2F87|1|A|U|42F87|1|A|G|10s55
2F87|1|A|U|42F87|1|A|G|5s35
2F87|1|A|U|42F87|1|A|G|9cWW
2F87|1|A|U|42F87|1|A|U|4n0BP


Base-PairsCount (4)Relative Frequency
cWW41.000
Base-PhosphateCount (7)Relative Frequency
3BPh10.143
0BPh60.857
Base-StackingCount (6)Relative Frequency
s5340.667
s5520.333

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)