NDB ID: 2F87 PDB ID: 2F87 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
2F87|1|A|A|6 | 2F87|1|A|A|6 | | | 0BPh |
2F87|1|A|A|6 | 2F87|1|A|A|7 | | s35 | |
2F87|1|A|A|7 | 2F87|1|A|A|6 | | s53 | |
2F87|1|A|A|7 | 2F87|1|A|A|7 | | | 0BPh |
2F87|1|A|A|7 | 2F87|1|A|G|5 | | ns33 | |
2F87|1|A|A|7 | 2F87|1|A|G|8 | | s35 | |
2F87|1|A|C|11 | 2F87|1|A|C|11 | | | 0BPh |
2F87|1|A|C|11 | 2F87|1|A|C|12 | | s35 | |
2F87|1|A|C|11 | 2F87|1|A|G|10 | | s53 | |
2F87|1|A|C|11 | 2F87|1|A|G|2 | cWW | | |
2F87|1|A|C|12 | 2F87|1|A|C|11 | | s53 | |
2F87|1|A|C|12 | 2F87|1|A|C|12 | | | 0BPh |
2F87|1|A|C|12 | 2F87|1|A|G|1 | cWW | | |
2F87|1|A|C|12 | 2F87|1|A|G|2 | | s55 | |
2F87|1|A|C|3 | 2F87|1|A|C|3 | | | 0BPh |
2F87|1|A|C|3 | 2F87|1|A|G|10 | cWW | | |
2F87|1|A|C|3 | 2F87|1|A|G|2 | | s53 | |
2F87|1|A|C|3 | 2F87|1|A|U|4 | | s35 | |
2F87|1|A|G|1 | 2F87|1|A|C|12 | cWW | | |
2F87|1|A|G|1 | 2F87|1|A|G|1 | | | n0BP |
2F87|1|A|G|1 | 2F87|1|A|G|2 | | s35 | |
2F87|1|A|G|10 | 2F87|1|A|C|11 | | s35 | |
2F87|1|A|G|10 | 2F87|1|A|C|3 | cWW | | |
2F87|1|A|G|10 | 2F87|1|A|G|10 | | | 0BPh |
2F87|1|A|G|10 | 2F87|1|A|G|9 | | s53 | |
2F87|1|A|G|10 | 2F87|1|A|U|4 | | s55 | |
2F87|1|A|G|2 | 2F87|1|A|C|11 | cWW | | |
2F87|1|A|G|2 | 2F87|1|A|C|12 | | s55 | |
2F87|1|A|G|2 | 2F87|1|A|C|3 | | s35 | |
2F87|1|A|G|2 | 2F87|1|A|G|1 | | s53 | |
2F87|1|A|G|2 | 2F87|1|A|G|2 | | | n0BP |
2F87|1|A|G|5 | 2F87|1|A|A|7 | | ns33 | |
2F87|1|A|G|5 | 2F87|1|A|G|8 | ntSH | | 3BPh |
2F87|1|A|G|5 | 2F87|1|A|G|9 | | ns55 | |
2F87|1|A|G|5 | 2F87|1|A|U|4 | | s53 | |
2F87|1|A|G|8 | 2F87|1|A|A|7 | | s53 | |
2F87|1|A|G|8 | 2F87|1|A|G|5 | ntHS | | |
2F87|1|A|G|8 | 2F87|1|A|G|8 | | | n0BP |
2F87|1|A|G|8 | 2F87|1|A|G|9 | | s35 | |
2F87|1|A|G|9 | 2F87|1|A|G|10 | | s35 | |
2F87|1|A|G|9 | 2F87|1|A|G|5 | | ns55 | |
2F87|1|A|G|9 | 2F87|1|A|G|8 | | s53 | |
2F87|1|A|G|9 | 2F87|1|A|U|4 | cWW | | |
2F87|1|A|U|4 | 2F87|1|A|C|3 | | s53 | |
2F87|1|A|U|4 | 2F87|1|A|G|10 | | s55 | |
2F87|1|A|U|4 | 2F87|1|A|G|5 | | s35 | |
2F87|1|A|U|4 | 2F87|1|A|G|9 | cWW | | |
2F87|1|A|U|4 | 2F87|1|A|U|4 | | | n0BP |
Base-Pairs | Count (4) | Relative Frequency |
---|
cWW | 4 | 1.000 |
Base-Phosphate | Count (7) | Relative Frequency |
---|
3BPh | 1 | 0.143 |
0BPh | 6 | 0.857 |
Base-Stacking | Count (6) | Relative Frequency |
---|
s53 | 4 | 0.667 |
s55 | 2 | 0.333 |