NDB ID: DR0030 PDB ID: 2G5K 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
2G5K|1|A|A|15 | 2G5K|1|A|A|15 | | | n0BP |
2G5K|1|A|A|15 | 2G5K|1|A|A|17 | | s35 | |
2G5K|1|A|A|15 | 2G5K|1|A|G|14 | | s53 | |
2G5K|1|A|A|15 | 2G5K|1|B|C|34 | | s55 | |
2G5K|1|A|A|15 | 2G5K|1|B|U|33 | cWW | | |
2G5K|1|A|A|16 | 2G5K|1|A|A|15 | | | |
2G5K|1|A|A|16 | 2G5K|1|A|A|16 | | | 0BPh |
2G5K|1|A|A|17 | 2G5K|1|A|A|15 | | s53 | |
2G5K|1|A|A|17 | 2G5K|1|A|A|16 | | | 7BPh |
2G5K|1|A|A|17 | 2G5K|1|A|A|17 | | | 0BPh |
2G5K|1|A|A|17 | 2G5K|1|B|C|32 | cSW | | |
2G5K|1|A|A|17 | 2G5K|1|B|G|31 | ncSW | | |
2G5K|1|A|A|18 | 2G5K|1|A|A|18 | | | 0BPh |
2G5K|1|A|C|11 | 2G5K|1|A|C|11 | | | 0BPh |
2G5K|1|A|C|11 | 2G5K|1|A|C|12 | | s35 | |
2G5K|1|A|C|11 | 2G5K|1|A|U|10 | | s53 | |
2G5K|1|A|C|11 | 2G5K|1|B|A|38 | | s55 | |
2G5K|1|A|C|11 | 2G5K|1|B|G|37 | cWW | | |
2G5K|1|A|C|12 | 2G5K|1|A|C|11 | | s53 | |
2G5K|1|A|C|12 | 2G5K|1|A|C|12 | | | 0BPh |
2G5K|1|A|C|12 | 2G5K|1|A|G|13 | | s35 | |
2G5K|1|A|C|12 | 2G5K|1|B|G|36 | cWW | | |
2G5K|1|A|C|12 | 2G5K|1|B|G|37 | | s55 | |
2G5K|1|A|C|21 | 2G5K|1|A|C|21 | | | 0BPh |
2G5K|1|A|C|21 | 2G5K|1|A|G|22 | | ns35 | |
2G5K|1|A|C|21 | 2G5K|1|A|U|20 | | s53 | |
2G5K|1|A|C|21 | 2G5K|1|B|G|28 | cWW | | |
2G5K|1|A|C|23 | 2G5K|1|A|C|23 | | | 0BPh |
2G5K|1|A|C|23 | 2G5K|1|A|G|22 | | s53 | |
2G5K|1|A|C|23 | 2G5K|1|B|G|26 | cWW | | |
2G5K|1|A|C|4 | 2G5K|1|A|C|4 | | | 0BPh |
2G5K|1|A|C|4 | 2G5K|1|A|G|3 | | s53 | |
2G5K|1|A|C|4 | 2G5K|1|A|G|5 | | s35 | |
2G5K|1|A|C|4 | 2G5K|1|B|G|45 | cWW | | |
2G5K|1|A|C|7 | 2G5K|1|A|C|7 | | | 0BPh |
2G5K|1|A|C|7 | 2G5K|1|A|G|8 | | s35 | |
2G5K|1|A|C|7 | 2G5K|1|A|U|6 | | s53 | |
2G5K|1|A|C|7 | 2G5K|1|B|G|42 | cWW | | |
2G5K|1|A|C|9 | 2G5K|1|A|C|9 | | | 0BPh |
2G5K|1|A|C|9 | 2G5K|1|A|G|8 | | s53 | |
2G5K|1|A|C|9 | 2G5K|1|A|U|10 | | s35 | |
2G5K|1|A|C|9 | 2G5K|1|B|A|40 | cWS | | |
2G5K|1|A|G|13 | 2G5K|1|A|C|12 | | s53 | |
2G5K|1|A|G|13 | 2G5K|1|A|G|13 | | | 0BPh |
2G5K|1|A|G|13 | 2G5K|1|A|G|14 | | s35 | |
2G5K|1|A|G|13 | 2G5K|1|B|C|35 | cWW | | |
2G5K|1|A|G|13 | 2G5K|1|B|G|36 | | s55 | |
2G5K|1|A|G|14 | 2G5K|1|A|A|15 | | s35 | |
2G5K|1|A|G|14 | 2G5K|1|A|G|13 | | s53 | |
2G5K|1|A|G|14 | 2G5K|1|A|G|14 | | | 0BPh |
2G5K|1|A|G|14 | 2G5K|1|B|C|34 | cWW | | |
2G5K|1|A|G|14 | 2G5K|1|B|C|35 | | s55 | |
2G5K|1|A|G|19 | 2G5K|1|A|A|18 | | | n0BP |
2G5K|1|A|G|19 | 2G5K|1|A|G|19 | | | n0BP |
2G5K|1|A|G|19 | 2G5K|1|A|U|20 | | s35 | |
2G5K|1|A|G|19 | 2G5K|1|B|C|30 | cWW | | |
2G5K|1|A|G|19 | 2G5K|1|B|G|31 | | s55 | |
2G5K|1|A|G|22 | 2G5K|1|A|C|21 | | ns53 | |
2G5K|1|A|G|22 | 2G5K|1|A|C|23 | | s35 | |
2G5K|1|A|G|22 | 2G5K|1|A|G|22 | | | 0BPh |
2G5K|1|A|G|22 | 2G5K|1|B|C|27 | cWW | | |
2G5K|1|A|G|22 | 2G5K|1|B|G|28 | | s55 | |
2G5K|1|A|G|3 | 2G5K|1|A|C|4 | | s35 | |
2G5K|1|A|G|3 | 2G5K|1|A|G|3 | | | 0BPh |
2G5K|1|A|G|3 | 2G5K|1|B|C|46 | cWW | | |
2G5K|1|A|G|5 | 2G5K|1|A|C|4 | | s53 | |
2G5K|1|A|G|5 | 2G5K|1|A|G|5 | | | 0BPh |
2G5K|1|A|G|5 | 2G5K|1|A|U|6 | | s35 | |
2G5K|1|A|G|5 | 2G5K|1|B|C|44 | cWW | | |
2G5K|1|A|G|5 | 2G5K|1|B|G|45 | | s55 | |
2G5K|1|A|G|8 | 2G5K|1|A|C|7 | | s53 | |
2G5K|1|A|G|8 | 2G5K|1|A|C|9 | | s35 | |
2G5K|1|A|G|8 | 2G5K|1|A|G|8 | | | 0BPh |
2G5K|1|A|G|8 | 2G5K|1|B|A|40 | ncWS | | |
2G5K|1|A|G|8 | 2G5K|1|B|A|41 | | | 4BPh |
2G5K|1|A|G|8 | 2G5K|1|B|G|42 | | s55 | |
2G5K|1|A|U|10 | 2G5K|1|A|C|11 | | s35 | |
2G5K|1|A|U|10 | 2G5K|1|A|C|9 | | s53 | |
2G5K|1|A|U|10 | 2G5K|1|A|U|10 | | | 0BPh |
2G5K|1|A|U|10 | 2G5K|1|B|A|38 | cWW | | |
2G5K|1|A|U|2 | 2G5K|1|A|U|2 | | | 0BPh |
2G5K|1|A|U|20 | 2G5K|1|A|C|21 | | s35 | |
2G5K|1|A|U|20 | 2G5K|1|A|G|19 | | s53 | |
2G5K|1|A|U|20 | 2G5K|1|A|U|20 | | | 0BPh |
2G5K|1|A|U|20 | 2G5K|1|B|U|29 | cWW | | |
2G5K|1|A|U|6 | 2G5K|1|A|C|7 | | s35 | |
2G5K|1|A|U|6 | 2G5K|1|A|G|5 | | s53 | |
2G5K|1|A|U|6 | 2G5K|1|A|U|6 | | | 0BPh |
2G5K|1|A|U|6 | 2G5K|1|B|U|43 | cWW | | |
2G5K|1|B|A|38 | 2G5K|1|A|C|11 | | s55 | |
2G5K|1|B|A|38 | 2G5K|1|A|U|10 | cWW | | |
2G5K|1|B|A|38 | 2G5K|1|B|A|38 | | | n0BP |
2G5K|1|B|A|38 | 2G5K|1|B|A|40 | | s35 | |
2G5K|1|B|A|38 | 2G5K|1|B|G|37 | | s53 | |
2G5K|1|B|A|39 | 2G5K|1|B|A|38 | | | |
2G5K|1|B|A|39 | 2G5K|1|B|A|39 | | | 0BPh |
2G5K|1|B|A|40 | 2G5K|1|A|C|9 | cSW | | |
2G5K|1|B|A|40 | 2G5K|1|A|G|8 | ncSW | | |
2G5K|1|B|A|40 | 2G5K|1|B|A|38 | | s53 | |
2G5K|1|B|A|40 | 2G5K|1|B|A|39 | | | 7BPh |
2G5K|1|B|A|40 | 2G5K|1|B|A|40 | | | 0BPh |
2G5K|1|B|A|41 | 2G5K|1|B|A|41 | | | 0BPh |
2G5K|1|B|C|27 | 2G5K|1|A|G|22 | cWW | | |
2G5K|1|B|C|27 | 2G5K|1|B|C|27 | | | 0BPh |
2G5K|1|B|C|27 | 2G5K|1|B|G|26 | | s53 | |
2G5K|1|B|C|27 | 2G5K|1|B|G|28 | | s35 | |
2G5K|1|B|C|30 | 2G5K|1|A|G|19 | cWW | | |
2G5K|1|B|C|30 | 2G5K|1|B|C|30 | | | 0BPh |
2G5K|1|B|C|30 | 2G5K|1|B|G|31 | | s35 | |
2G5K|1|B|C|30 | 2G5K|1|B|U|29 | | s53 | |
2G5K|1|B|C|32 | 2G5K|1|A|A|17 | cWS | | |
2G5K|1|B|C|32 | 2G5K|1|B|C|32 | | | 0BPh |
2G5K|1|B|C|32 | 2G5K|1|B|G|31 | | s53 | |
2G5K|1|B|C|32 | 2G5K|1|B|U|33 | | s35 | |
2G5K|1|B|C|34 | 2G5K|1|A|A|15 | | s55 | |
2G5K|1|B|C|34 | 2G5K|1|A|G|14 | cWW | | |
2G5K|1|B|C|34 | 2G5K|1|B|C|34 | | | 0BPh |
2G5K|1|B|C|34 | 2G5K|1|B|C|35 | | s35 | |
2G5K|1|B|C|34 | 2G5K|1|B|U|33 | | s53 | |
2G5K|1|B|C|35 | 2G5K|1|A|G|13 | cWW | | |
2G5K|1|B|C|35 | 2G5K|1|A|G|14 | | s55 | |
2G5K|1|B|C|35 | 2G5K|1|B|C|34 | | s53 | |
2G5K|1|B|C|35 | 2G5K|1|B|C|35 | | | 0BPh |
2G5K|1|B|C|35 | 2G5K|1|B|G|36 | | s35 | |
2G5K|1|B|C|44 | 2G5K|1|A|G|5 | cWW | | |
2G5K|1|B|C|44 | 2G5K|1|B|C|44 | | | 0BPh |
2G5K|1|B|C|44 | 2G5K|1|B|G|45 | | ns35 | |
2G5K|1|B|C|44 | 2G5K|1|B|U|43 | | s53 | |
2G5K|1|B|C|46 | 2G5K|1|A|G|3 | cWW | | |
2G5K|1|B|C|46 | 2G5K|1|B|C|46 | | | 0BPh |
2G5K|1|B|C|46 | 2G5K|1|B|G|45 | | s53 | |
2G5K|1|B|G|26 | 2G5K|1|A|C|23 | cWW | | |
2G5K|1|B|G|26 | 2G5K|1|B|C|27 | | s35 | |
2G5K|1|B|G|26 | 2G5K|1|B|G|26 | | | 0BPh |
2G5K|1|B|G|28 | 2G5K|1|A|C|21 | cWW | | |
2G5K|1|B|G|28 | 2G5K|1|A|G|22 | | s55 | |
2G5K|1|B|G|28 | 2G5K|1|B|C|27 | | s53 | |
2G5K|1|B|G|28 | 2G5K|1|B|G|28 | | | 0BPh |
2G5K|1|B|G|28 | 2G5K|1|B|U|29 | | s35 | |
2G5K|1|B|G|31 | 2G5K|1|A|A|17 | ncWS | | |
2G5K|1|B|G|31 | 2G5K|1|A|A|18 | | | 4BPh |
2G5K|1|B|G|31 | 2G5K|1|A|G|19 | | s55 | |
2G5K|1|B|G|31 | 2G5K|1|B|C|30 | | s53 | |
2G5K|1|B|G|31 | 2G5K|1|B|C|32 | | s35 | |
2G5K|1|B|G|31 | 2G5K|1|B|G|31 | | | 0BPh |
2G5K|1|B|G|36 | 2G5K|1|A|C|12 | cWW | | |
2G5K|1|B|G|36 | 2G5K|1|A|G|13 | | s55 | |
2G5K|1|B|G|36 | 2G5K|1|B|C|35 | | s53 | |
2G5K|1|B|G|36 | 2G5K|1|B|G|36 | | | 0BPh |
2G5K|1|B|G|36 | 2G5K|1|B|G|37 | | s35 | |
2G5K|1|B|G|37 | 2G5K|1|A|C|11 | cWW | | |
2G5K|1|B|G|37 | 2G5K|1|A|C|12 | | s55 | |
2G5K|1|B|G|37 | 2G5K|1|B|A|38 | | s35 | |
2G5K|1|B|G|37 | 2G5K|1|B|G|36 | | s53 | |
2G5K|1|B|G|37 | 2G5K|1|B|G|37 | | | 0BPh |
2G5K|1|B|G|42 | 2G5K|1|A|C|7 | cWW | | |
2G5K|1|B|G|42 | 2G5K|1|A|G|8 | | s55 | |
2G5K|1|B|G|42 | 2G5K|1|B|A|41 | | | n0BP |
2G5K|1|B|G|42 | 2G5K|1|B|G|42 | | | n0BP |
2G5K|1|B|G|42 | 2G5K|1|B|U|43 | | s35 | |
2G5K|1|B|G|45 | 2G5K|1|A|C|4 | cWW | | |
2G5K|1|B|G|45 | 2G5K|1|A|G|5 | | s55 | |
2G5K|1|B|G|45 | 2G5K|1|B|C|44 | | ns53 | |
2G5K|1|B|G|45 | 2G5K|1|B|C|46 | | s35 | |
2G5K|1|B|G|45 | 2G5K|1|B|G|45 | | | 0BPh |
2G5K|1|B|U|25 | 2G5K|1|B|U|25 | | | 0BPh |
2G5K|1|B|U|29 | 2G5K|1|A|U|20 | cWW | | |
2G5K|1|B|U|29 | 2G5K|1|B|C|30 | | s35 | |
2G5K|1|B|U|29 | 2G5K|1|B|G|28 | | s53 | |
2G5K|1|B|U|29 | 2G5K|1|B|U|29 | | | 0BPh |
2G5K|1|B|U|33 | 2G5K|1|A|A|15 | cWW | | |
2G5K|1|B|U|33 | 2G5K|1|B|C|32 | | s53 | |
2G5K|1|B|U|33 | 2G5K|1|B|C|34 | | s35 | |
2G5K|1|B|U|33 | 2G5K|1|B|U|33 | | | 0BPh |
2G5K|1|B|U|43 | 2G5K|1|A|U|6 | cWW | | |
2G5K|1|B|U|43 | 2G5K|1|B|C|44 | | s35 | |
2G5K|1|B|U|43 | 2G5K|1|B|G|42 | | s53 | |
2G5K|1|B|U|43 | 2G5K|1|B|U|43 | | | 0BPh |
Base-Pairs | Count (18) | Relative Frequency |
---|
cWW | 16 | 0.889 |
cWS | 2 | 0.111 |
Base-Phosphate | Count (44) | Relative Frequency |
---|
4BPh | 2 | 0.045 |
7BPh | 2 | 0.045 |
0BPh | 40 | 0.909 |
Base-Stacking | Count (23) | Relative Frequency |
---|
s53 | 14 | 0.609 |
s55 | 9 | 0.391 |