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NDB ID: NA0294  PDB ID: 2JA6 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2JA6|1|P|A|42JA6|1|P|A|40BPh
2JA6|1|P|A|42JA6|1|P|C|5s35
2JA6|1|P|A|42JA6|1|P|G|3s53
2JA6|1|P|A|72JA6|1|P|A|70BPh
2JA6|1|P|A|72JA6|1|P|C|6s53
2JA6|1|P|A|72JA6|1|P|G|8s35
2JA6|1|P|C|22JA6|1|P|C|20BPh
2JA6|1|P|C|22JA6|1|P|G|3s35
2JA6|1|P|C|22JA6|1|P|U|1s53
2JA6|1|P|C|52JA6|1|P|A|4s53
2JA6|1|P|C|52JA6|1|P|C|50BPh
2JA6|1|P|C|52JA6|1|P|C|6s35
2JA6|1|P|C|62JA6|1|P|A|7s35
2JA6|1|P|C|62JA6|1|P|C|5s53
2JA6|1|P|C|62JA6|1|P|C|60BPh
2JA6|1|P|G|32JA6|1|P|A|4s35
2JA6|1|P|G|32JA6|1|P|C|2s53
2JA6|1|P|G|32JA6|1|P|G|30BPh
2JA6|1|P|G|82JA6|1|P|A|7s53
2JA6|1|P|G|82JA6|1|P|G|80BPh
2JA6|1|P|G|82JA6|1|P|G|9s35
2JA6|1|P|G|92JA6|1|P|G|8s53
2JA6|1|P|G|92JA6|1|P|G|90BPh
2JA6|1|P|U|02JA6|1|P|U|00BPh
2JA6|1|P|U|02JA6|1|P|U|1s35
2JA6|1|P|U|12JA6|1|P|C|2s35
2JA6|1|P|U|12JA6|1|P|U|0s53
2JA6|1|P|U|12JA6|1|P|U|10BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (10)Relative Frequency
0BPh101.000
Base-StackingCount (3)Relative Frequency
s5331.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)