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NDB ID: NA0295  PDB ID: 2JA7 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2JA7|1|3|A|102JA7|1|3|A|100BPh
2JA7|1|3|A|102JA7|1|3|G|9s53
2JA7|1|3|A|42JA7|1|3|A|40BPh
2JA7|1|3|A|42JA7|1|3|C|5s35
2JA7|1|3|A|42JA7|1|3|G|3s53
2JA7|1|3|A|72JA7|1|3|A|70BPh
2JA7|1|3|A|72JA7|1|3|C|6s53
2JA7|1|3|A|72JA7|1|3|G|8s35
2JA7|1|3|C|22JA7|1|3|C|20BPh
2JA7|1|3|C|22JA7|1|3|G|3s35
2JA7|1|3|C|22JA7|1|3|U|1
2JA7|1|3|C|52JA7|1|3|A|4s53
2JA7|1|3|C|52JA7|1|3|C|50BPh
2JA7|1|3|C|52JA7|1|3|C|6s35
2JA7|1|3|C|62JA7|1|3|A|7s35
2JA7|1|3|C|62JA7|1|3|C|5s53
2JA7|1|3|C|62JA7|1|3|C|60BPh
2JA7|1|3|G|32JA7|1|3|A|4s35
2JA7|1|3|G|32JA7|1|3|C|2s53
2JA7|1|3|G|32JA7|1|3|G|30BPh
2JA7|1|3|G|82JA7|1|3|A|7s53
2JA7|1|3|G|82JA7|1|3|G|80BPh
2JA7|1|3|G|82JA7|1|3|G|9s35
2JA7|1|3|G|92JA7|1|3|A|10s35
2JA7|1|3|G|92JA7|1|3|G|8s53
2JA7|1|3|G|92JA7|1|3|G|90BPh
2JA7|1|3|U|12JA7|1|3|U|10BPh
2JA7|1|6|A|102JA7|1|6|A|100BPh
2JA7|1|6|A|102JA7|1|6|G|9s53
2JA7|1|6|A|42JA7|1|6|A|40BPh
2JA7|1|6|A|42JA7|1|6|C|5s35
2JA7|1|6|A|42JA7|1|6|G|3s53
2JA7|1|6|A|72JA7|1|6|A|70BPh
2JA7|1|6|A|72JA7|1|6|C|6s53
2JA7|1|6|A|72JA7|1|6|G|8s35
2JA7|1|6|C|22JA7|1|6|C|20BPh
2JA7|1|6|C|22JA7|1|6|G|3s35
2JA7|1|6|C|22JA7|1|6|U|1
2JA7|1|6|C|52JA7|1|6|A|4s53
2JA7|1|6|C|52JA7|1|6|C|50BPh
2JA7|1|6|C|52JA7|1|6|C|6s35
2JA7|1|6|C|62JA7|1|6|A|7s35
2JA7|1|6|C|62JA7|1|6|C|5s53
2JA7|1|6|C|62JA7|1|6|C|60BPh
2JA7|1|6|G|32JA7|1|6|A|4s35
2JA7|1|6|G|32JA7|1|6|C|2s53
2JA7|1|6|G|32JA7|1|6|G|30BPh
2JA7|1|6|G|82JA7|1|6|A|7s53
2JA7|1|6|G|82JA7|1|6|G|80BPh
2JA7|1|6|G|82JA7|1|6|G|9s35
2JA7|1|6|G|92JA7|1|6|A|10s35
2JA7|1|6|G|92JA7|1|6|G|8s53
2JA7|1|6|G|92JA7|1|6|G|90BPh
2JA7|1|6|U|12JA7|1|6|U|10BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (20)Relative Frequency
0BPh201.000
Base-StackingCount (6)Relative Frequency
s5361.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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