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As of 11-May-2022 number of released structures: 12077
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NDB ID: 2JR4  PDB ID: 2JR4 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2JR4|1|A|A|352JR4|1|A|C|36s35
2JR4|1|A|A|352JR4|1|A|U|34s53
2JR4|1|A|A|372JR4|1|A|A|37n0BP
2JR4|1|A|A|372JR4|1|A|A|38s35
2JR4|1|A|A|372JR4|1|A|C|36s53
2JR4|1|A|A|372JR4|1|A|U|33
2JR4|1|A|A|382JR4|1|A|A|37s53
2JR4|1|A|A|382JR4|1|A|A|380BPh
2JR4|1|A|A|382JR4|1|A|C|32ncWS
2JR4|1|A|A|382JR4|1|A|G|39s35
2JR4|1|A|A|412JR4|1|A|A|410BPh
2JR4|1|A|A|412JR4|1|A|C|30ns55
2JR4|1|A|A|412JR4|1|A|G|40s53
2JR4|1|A|A|412JR4|1|A|G|42s35
2JR4|1|A|A|412JR4|1|A|U|29cWW
2JR4|1|A|C|272JR4|1|A|C|270BPh
2JR4|1|A|C|272JR4|1|A|C|28s35
2JR4|1|A|C|272JR4|1|A|G|43cWW
2JR4|1|A|C|282JR4|1|A|C|27s53
2JR4|1|A|C|282JR4|1|A|C|280BPh
2JR4|1|A|C|282JR4|1|A|G|42cWW
2JR4|1|A|C|282JR4|1|A|G|43s55
2JR4|1|A|C|282JR4|1|A|U|29s35
2JR4|1|A|C|302JR4|1|A|A|41ns55
2JR4|1|A|C|302JR4|1|A|C|300BPh
2JR4|1|A|C|302JR4|1|A|C|31s35
2JR4|1|A|C|302JR4|1|A|G|40cWW
2JR4|1|A|C|302JR4|1|A|U|29s53
2JR4|1|A|C|312JR4|1|A|C|30s53
2JR4|1|A|C|312JR4|1|A|C|310BPh
2JR4|1|A|C|312JR4|1|A|C|32ns35
2JR4|1|A|C|312JR4|1|A|G|39cWW
2JR4|1|A|C|312JR4|1|A|G|40s55
2JR4|1|A|C|322JR4|1|A|A|38ncSW
2JR4|1|A|C|322JR4|1|A|C|31ns53
2JR4|1|A|C|322JR4|1|A|C|320BPh
2JR4|1|A|C|362JR4|1|A|A|35s53
2JR4|1|A|C|362JR4|1|A|A|37s35
2JR4|1|A|C|362JR4|1|A|C|360BPh
2JR4|1|A|G|392JR4|1|A|A|38s53
2JR4|1|A|G|392JR4|1|A|C|31cWW
2JR4|1|A|G|392JR4|1|A|G|390BPh
2JR4|1|A|G|392JR4|1|A|G|40s35
2JR4|1|A|G|402JR4|1|A|A|41s35
2JR4|1|A|G|402JR4|1|A|C|30cWW
2JR4|1|A|G|402JR4|1|A|C|31s55
2JR4|1|A|G|402JR4|1|A|G|39s53
2JR4|1|A|G|402JR4|1|A|G|400BPh
2JR4|1|A|G|422JR4|1|A|A|41s53
2JR4|1|A|G|422JR4|1|A|C|28cWW
2JR4|1|A|G|422JR4|1|A|G|420BPh
2JR4|1|A|G|422JR4|1|A|G|43s35
2JR4|1|A|G|422JR4|1|A|U|29s55
2JR4|1|A|G|432JR4|1|A|C|27cWW
2JR4|1|A|G|432JR4|1|A|C|28s55
2JR4|1|A|G|432JR4|1|A|G|42s53
2JR4|1|A|G|432JR4|1|A|G|430BPh
2JR4|1|A|U|292JR4|1|A|A|41cWW
2JR4|1|A|U|292JR4|1|A|C|28s53
2JR4|1|A|U|292JR4|1|A|C|30s35
2JR4|1|A|U|292JR4|1|A|G|42s55
2JR4|1|A|U|292JR4|1|A|U|290BPh
2JR4|1|A|U|332JR4|1|A|U|330BPh
2JR4|1|A|U|342JR4|1|A|A|35s35


Base-PairsCount (5)Relative Frequency
cWW51.000
Base-PhosphateCount (14)Relative Frequency
0BPh141.000
Base-StackingCount (7)Relative Frequency
s5340.571
s5530.429

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)