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As of 18-May-2022 number of released structures: 12082
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NDB ID: 2JWV  PDB ID: 2JWV 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2JWV|1|A|A|102JWV|1|A|A|100BPh
2JWV|1|A|A|102JWV|1|A|A|11s35
2JWV|1|A|A|102JWV|1|A|A|9ns53
2JWV|1|A|A|102JWV|1|A|G|22s55
2JWV|1|A|A|102JWV|1|A|U|21cWW
2JWV|1|A|A|112JWV|1|A|A|10s53
2JWV|1|A|A|112JWV|1|A|A|110BPh
2JWV|1|A|A|112JWV|1|A|C|12s35
2JWV|1|A|A|112JWV|1|A|U|20cWW
2JWV|1|A|A|112JWV|1|A|U|21s55
2JWV|1|A|A|162JWV|1|A|A|160BPh
2JWV|1|A|A|162JWV|1|A|A|17s35
2JWV|1|A|A|162JWV|1|A|G|14ntHS
2JWV|1|A|A|162JWV|1|A|U|15s53
2JWV|1|A|A|172JWV|1|A|A|16s53
2JWV|1|A|A|172JWV|1|A|A|170BPh
2JWV|1|A|A|172JWV|1|A|G|14ntHS
2JWV|1|A|A|172JWV|1|A|G|18s35
2JWV|1|A|A|172JWV|1|A|U|13ntHS
2JWV|1|A|A|22JWV|1|A|A|20BPh
2JWV|1|A|A|22JWV|1|A|C|29ns55
2JWV|1|A|A|22JWV|1|A|G|1s53
2JWV|1|A|A|22JWV|1|A|U|28cWW
2JWV|1|A|A|22JWV|1|A|U|3s35
2JWV|1|A|A|272JWV|1|A|A|270BPh
2JWV|1|A|A|272JWV|1|A|A|4s55
2JWV|1|A|A|272JWV|1|A|U|26s53
2JWV|1|A|A|272JWV|1|A|U|28s35
2JWV|1|A|A|272JWV|1|A|U|3cWW
2JWV|1|A|A|42JWV|1|A|A|27s55
2JWV|1|A|A|42JWV|1|A|A|40BPh
2JWV|1|A|A|42JWV|1|A|C|5s35
2JWV|1|A|A|42JWV|1|A|U|26cWW
2JWV|1|A|A|42JWV|1|A|U|3s53
2JWV|1|A|A|92JWV|1|A|A|10ns35
2JWV|1|A|A|92JWV|1|A|A|9n0BP
2JWV|1|A|A|92JWV|1|A|G|22tHS
2JWV|1|A|A|92JWV|1|A|G|23ntHS
2JWV|1|A|A|92JWV|1|A|G|8ns53
2JWV|1|A|C|122JWV|1|A|A|11s53
2JWV|1|A|C|122JWV|1|A|C|120BPh
2JWV|1|A|C|122JWV|1|A|G|19cWW
2JWV|1|A|C|122JWV|1|A|U|13s35
2JWV|1|A|C|242JWV|1|A|C|240BPh
2JWV|1|A|C|242JWV|1|A|G|23
2JWV|1|A|C|242JWV|1|A|G|25s35
2JWV|1|A|C|242JWV|1|A|G|8s55
2JWV|1|A|C|242JWV|1|A|U|6cWW
2JWV|1|A|C|292JWV|1|A|A|2ns55
2JWV|1|A|C|292JWV|1|A|C|290BPh
2JWV|1|A|C|292JWV|1|A|G|1cWW
2JWV|1|A|C|292JWV|1|A|U|28s53
2JWV|1|A|C|52JWV|1|A|A|4s53
2JWV|1|A|C|52JWV|1|A|C|50BPh
2JWV|1|A|C|52JWV|1|A|G|25cWW
2JWV|1|A|C|52JWV|1|A|U|6s35
2JWV|1|A|G|12JWV|1|A|A|2s35
2JWV|1|A|G|12JWV|1|A|C|29cWW
2JWV|1|A|G|12JWV|1|A|G|10BPh
2JWV|1|A|G|142JWV|1|A|A|16ntSH
2JWV|1|A|G|142JWV|1|A|A|17ntSH3BPh
2JWV|1|A|G|142JWV|1|A|G|140BPh
2JWV|1|A|G|142JWV|1|A|U|13s53
2JWV|1|A|G|182JWV|1|A|A|17s53
2JWV|1|A|G|182JWV|1|A|G|180BPh
2JWV|1|A|G|182JWV|1|A|G|19s35
2JWV|1|A|G|182JWV|1|A|U|13cWW
2JWV|1|A|G|192JWV|1|A|C|12cWW
2JWV|1|A|G|192JWV|1|A|G|18s53
2JWV|1|A|G|192JWV|1|A|G|19n0BP
2JWV|1|A|G|192JWV|1|A|U|13s55
2JWV|1|A|G|192JWV|1|A|U|20s35
2JWV|1|A|G|222JWV|1|A|A|10s55
2JWV|1|A|G|222JWV|1|A|A|9tSH
2JWV|1|A|G|222JWV|1|A|G|220BPh
2JWV|1|A|G|222JWV|1|A|G|23s35
2JWV|1|A|G|222JWV|1|A|U|21s53
2JWV|1|A|G|232JWV|1|A|A|9ntSH
2JWV|1|A|G|232JWV|1|A|G|22s53
2JWV|1|A|G|232JWV|1|A|G|23n0BP
2JWV|1|A|G|232JWV|1|A|G|8s33
2JWV|1|A|G|252JWV|1|A|C|24s53
2JWV|1|A|G|252JWV|1|A|C|5cWW
2JWV|1|A|G|252JWV|1|A|G|250BPh
2JWV|1|A|G|252JWV|1|A|U|26s35
2JWV|1|A|G|252JWV|1|A|U|6s55
2JWV|1|A|G|82JWV|1|A|A|9ns35
2JWV|1|A|G|82JWV|1|A|C|24s55
2JWV|1|A|G|82JWV|1|A|G|23s33
2JWV|1|A|G|82JWV|1|A|G|8n0BP
2JWV|1|A|G|82JWV|1|A|U|7s53
2JWV|1|A|U|132JWV|1|A|A|17ntSH
2JWV|1|A|U|132JWV|1|A|C|12s53
2JWV|1|A|U|132JWV|1|A|G|14s35
2JWV|1|A|U|132JWV|1|A|G|18cWW
2JWV|1|A|U|132JWV|1|A|G|19s55
2JWV|1|A|U|132JWV|1|A|U|130BPh
2JWV|1|A|U|152JWV|1|A|A|16s35
2JWV|1|A|U|152JWV|1|A|U|150BPh
2JWV|1|A|U|202JWV|1|A|A|11cWW
2JWV|1|A|U|202JWV|1|A|G|19s53
2JWV|1|A|U|202JWV|1|A|U|200BPh
2JWV|1|A|U|202JWV|1|A|U|21s35
2JWV|1|A|U|212JWV|1|A|A|10cWW
2JWV|1|A|U|212JWV|1|A|A|11s55
2JWV|1|A|U|212JWV|1|A|G|22s35
2JWV|1|A|U|212JWV|1|A|U|20s53
2JWV|1|A|U|212JWV|1|A|U|210BPh
2JWV|1|A|U|262JWV|1|A|A|27s35
2JWV|1|A|U|262JWV|1|A|A|4cWW
2JWV|1|A|U|262JWV|1|A|G|25s53
2JWV|1|A|U|262JWV|1|A|U|260BPh
2JWV|1|A|U|282JWV|1|A|A|2cWW
2JWV|1|A|U|282JWV|1|A|A|27s53
2JWV|1|A|U|282JWV|1|A|C|29s35
2JWV|1|A|U|282JWV|1|A|U|280BPh
2JWV|1|A|U|32JWV|1|A|A|2s53
2JWV|1|A|U|32JWV|1|A|A|27cWW
2JWV|1|A|U|32JWV|1|A|A|4s35
2JWV|1|A|U|32JWV|1|A|U|30BPh
2JWV|1|A|U|62JWV|1|A|C|24cWW
2JWV|1|A|U|62JWV|1|A|C|5s53
2JWV|1|A|U|62JWV|1|A|G|25s55
2JWV|1|A|U|62JWV|1|A|U|60BPh
2JWV|1|A|U|62JWV|1|A|U|7s35
2JWV|1|A|U|72JWV|1|A|G|8s35
2JWV|1|A|U|72JWV|1|A|U|6s53
2JWV|1|A|U|72JWV|1|A|U|7n0BP


Base-PairsCount (11)Relative Frequency
cWW100.909
tHS10.091
Base-PhosphateCount (25)Relative Frequency
3BPh10.040
0BPh240.960
Base-StackingCount (15)Relative Frequency
s3310.067
s5380.533
s5560.400

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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