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NDB ID: 2JYM  PDB ID: 2JYM 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2JYM|1|A|A|112JYM|1|A|A|110BPh
2JYM|1|A|A|112JYM|1|A|C|10
2JYM|1|A|A|112JYM|1|A|G|12ncSH
2JYM|1|A|A|112JYM|1|A|G|9
2JYM|1|A|A|192JYM|1|A|A|190BPh
2JYM|1|A|A|192JYM|1|A|G|18s53
2JYM|1|A|A|192JYM|1|A|G|20s35
2JYM|1|A|A|192JYM|1|A|U|4cWW
2JYM|1|A|A|82JYM|1|A|A|80BPh
2JYM|1|A|A|82JYM|1|A|C|7ns53
2JYM|1|A|A|82JYM|1|A|G|17s55
2JYM|1|A|A|82JYM|1|A|G|9s35
2JYM|1|A|A|82JYM|1|A|U|16cWW
2JYM|1|A|C|102JYM|1|A|A|11
2JYM|1|A|C|102JYM|1|A|G|13cWW
2JYM|1|A|C|102JYM|1|A|G|9s53
2JYM|1|A|C|152JYM|1|A|C|150BPh
2JYM|1|A|C|152JYM|1|A|G|13s53
2JYM|1|A|C|152JYM|1|A|G|9cWW
2JYM|1|A|C|152JYM|1|A|U|16s35
2JYM|1|A|C|222JYM|1|A|C|22n0BP
2JYM|1|A|C|222JYM|1|A|G|1cWW
2JYM|1|A|C|222JYM|1|A|G|2s55
2JYM|1|A|C|222JYM|1|A|U|21s53
2JYM|1|A|C|32JYM|1|A|C|30BPh
2JYM|1|A|C|32JYM|1|A|G|2s53
2JYM|1|A|C|32JYM|1|A|G|20cWW
2JYM|1|A|C|32JYM|1|A|U|4s35
2JYM|1|A|C|52JYM|1|A|C|50BPh
2JYM|1|A|C|52JYM|1|A|C|7ns35
2JYM|1|A|C|52JYM|1|A|G|18cWW
2JYM|1|A|C|52JYM|1|A|U|4s53
2JYM|1|A|C|72JYM|1|A|A|8ns35
2JYM|1|A|C|72JYM|1|A|C|5ns53
2JYM|1|A|C|72JYM|1|A|C|70BPh
2JYM|1|A|C|72JYM|1|A|G|17cWW
2JYM|1|A|C|72JYM|1|A|G|68BPh
2JYM|1|A|G|12JYM|1|A|C|22cWW
2JYM|1|A|G|12JYM|1|A|G|10BPh
2JYM|1|A|G|12JYM|1|A|G|2s35
2JYM|1|A|G|122JYM|1|A|A|11ncHS
2JYM|1|A|G|122JYM|1|A|G|120BPh
2JYM|1|A|G|132JYM|1|A|A|11
2JYM|1|A|G|132JYM|1|A|C|10cWW
2JYM|1|A|G|132JYM|1|A|C|15s35n0BP
2JYM|1|A|G|132JYM|1|A|G|13
2JYM|1|A|G|172JYM|1|A|A|8s55
2JYM|1|A|G|172JYM|1|A|C|7cWW
2JYM|1|A|G|172JYM|1|A|G|170BPh
2JYM|1|A|G|172JYM|1|A|G|18s35
2JYM|1|A|G|172JYM|1|A|U|16s53
2JYM|1|A|G|182JYM|1|A|A|19s35
2JYM|1|A|G|182JYM|1|A|C|5cWW
2JYM|1|A|G|182JYM|1|A|G|17s53
2JYM|1|A|G|182JYM|1|A|G|180BPh
2JYM|1|A|G|22JYM|1|A|C|22s55
2JYM|1|A|G|22JYM|1|A|C|3s35
2JYM|1|A|G|22JYM|1|A|G|1s53
2JYM|1|A|G|22JYM|1|A|G|20BPh
2JYM|1|A|G|22JYM|1|A|U|21cWW
2JYM|1|A|G|202JYM|1|A|A|19s53
2JYM|1|A|G|202JYM|1|A|C|3cWW
2JYM|1|A|G|202JYM|1|A|G|200BPh
2JYM|1|A|G|202JYM|1|A|U|21s35
2JYM|1|A|G|202JYM|1|A|U|4s55
2JYM|1|A|G|62JYM|1|A|C|5
2JYM|1|A|G|62JYM|1|A|G|60BPh
2JYM|1|A|G|92JYM|1|A|A|11
2JYM|1|A|G|92JYM|1|A|A|8s53
2JYM|1|A|G|92JYM|1|A|C|10s35
2JYM|1|A|G|92JYM|1|A|C|15cWW
2JYM|1|A|G|92JYM|1|A|G|90BPh
2JYM|1|A|G|92JYM|1|A|U|16s55
2JYM|1|A|U|142JYM|1|A|U|140BPh
2JYM|1|A|U|162JYM|1|A|A|8cWW
2JYM|1|A|U|162JYM|1|A|C|15s53
2JYM|1|A|U|162JYM|1|A|G|17s35
2JYM|1|A|U|162JYM|1|A|G|9s55
2JYM|1|A|U|162JYM|1|A|U|160BPh
2JYM|1|A|U|212JYM|1|A|C|22s35
2JYM|1|A|U|212JYM|1|A|G|2cWW
2JYM|1|A|U|212JYM|1|A|G|20s53
2JYM|1|A|U|212JYM|1|A|U|210BPh
2JYM|1|A|U|42JYM|1|A|A|19cWW
2JYM|1|A|U|42JYM|1|A|C|3s53
2JYM|1|A|U|42JYM|1|A|C|5s35
2JYM|1|A|U|42JYM|1|A|G|20s55
2JYM|1|A|U|42JYM|1|A|U|40BPh


Base-PairsCount (9)Relative Frequency
cWW91.000
Base-PhosphateCount (20)Relative Frequency
8BPh10.050
0BPh190.950
Base-StackingCount (11)Relative Frequency
s5370.636
s5540.364

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)