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NDB ID: 2KD4  PDB ID: 2KD4 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2KD4|1|A|C|22KD4|1|A|C|20BPh
2KD4|1|A|C|22KD4|1|A|C|3s35
2KD4|1|A|C|22KD4|1|A|G|1s55
2KD4|1|A|C|22KD4|1|B|G|7cWW
2KD4|1|A|C|32KD4|1|A|C|2s53
2KD4|1|A|C|32KD4|1|B|G|6cWW
2KD4|1|A|C|32KD4|1|B|G|7s55
2KD4|1|A|C|52KD4|1|A|C|50BPh
2KD4|1|A|C|52KD4|1|A|G|4s53
2KD4|1|A|C|52KD4|1|B|G|4cWW
2KD4|1|A|C|82KD4|1|A|C|80BPh
2KD4|1|A|C|82KD4|1|A|G|7s33
2KD4|1|A|C|82KD4|1|B|G|1cWW
2KD4|1|A|G|12KD4|1|A|C|2s55
2KD4|1|A|G|12KD4|1|B|C|8cWW
2KD4|1|A|G|12KD4|1|B|G|7s53
2KD4|1|A|G|42KD4|1|A|C|3
2KD4|1|A|G|42KD4|1|A|C|5s35
2KD4|1|A|G|42KD4|1|A|G|40BPh
2KD4|1|A|G|42KD4|1|B|C|5cWW
2KD4|1|A|G|62KD4|1|A|G|60BPh
2KD4|1|A|G|62KD4|1|A|G|7s35
2KD4|1|A|G|62KD4|1|B|C|3cWW
2KD4|1|A|G|72KD4|1|A|C|8s33
2KD4|1|A|G|72KD4|1|A|G|6s53
2KD4|1|A|G|72KD4|1|A|G|70BPh
2KD4|1|A|G|72KD4|1|B|C|2cWW
2KD4|1|A|G|72KD4|1|B|C|3s55
2KD4|1|A|G|72KD4|1|B|G|1s35
2KD4|1|B|C|22KD4|1|A|G|7cWW
2KD4|1|B|C|22KD4|1|B|C|20BPh
2KD4|1|B|C|22KD4|1|B|C|3s35
2KD4|1|B|C|22KD4|1|B|G|1s55
2KD4|1|B|C|32KD4|1|A|G|6cWW
2KD4|1|B|C|32KD4|1|A|G|7s55
2KD4|1|B|C|32KD4|1|B|C|2s53
2KD4|1|B|C|52KD4|1|A|G|4cWW
2KD4|1|B|C|52KD4|1|B|C|50BPh
2KD4|1|B|C|52KD4|1|B|G|4s53
2KD4|1|B|C|82KD4|1|A|G|1cWW
2KD4|1|B|C|82KD4|1|B|C|80BPh
2KD4|1|B|C|82KD4|1|B|G|7s33
2KD4|1|B|G|12KD4|1|A|C|8cWW
2KD4|1|B|G|12KD4|1|A|G|7s53
2KD4|1|B|G|12KD4|1|B|C|2s55
2KD4|1|B|G|42KD4|1|A|C|5cWW
2KD4|1|B|G|42KD4|1|B|C|3
2KD4|1|B|G|42KD4|1|B|C|5s35
2KD4|1|B|G|42KD4|1|B|G|40BPh
2KD4|1|B|G|62KD4|1|A|C|3cWW
2KD4|1|B|G|62KD4|1|B|G|6n0BP
2KD4|1|B|G|62KD4|1|B|G|7s35
2KD4|1|B|G|72KD4|1|A|C|2cWW
2KD4|1|B|G|72KD4|1|A|C|3s55
2KD4|1|B|G|72KD4|1|A|G|1s35
2KD4|1|B|G|72KD4|1|B|C|8s33
2KD4|1|B|G|72KD4|1|B|G|6s53
2KD4|1|B|G|72KD4|1|B|G|70BPh


Base-PairsCount (8)Relative Frequency
cWW81.000
Base-PhosphateCount (11)Relative Frequency
0BPh111.000
Base-StackingCount (9)Relative Frequency
s3320.222
s5330.333
s5540.444

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)