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NDB ID: 2KD8  PDB ID: 2KD8 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2KD8|1|A|A|152KD8|1|A|A|150BPh
2KD8|1|A|A|152KD8|1|A|G|16s35
2KD8|1|A|A|152KD8|1|A|G|9s55
2KD8|1|A|A|152KD8|1|A|U|14s53
2KD8|1|A|A|152KD8|1|A|U|8cWW
2KD8|1|A|A|192KD8|1|A|A|190BPh
2KD8|1|A|A|192KD8|1|A|C|18s53
2KD8|1|A|A|192KD8|1|A|G|5s55
2KD8|1|A|A|192KD8|1|A|U|20s35
2KD8|1|A|A|192KD8|1|A|U|4cWW
2KD8|1|A|A|32KD8|1|A|A|30BPh
2KD8|1|A|A|32KD8|1|A|C|21ns55
2KD8|1|A|A|32KD8|1|A|G|2s53
2KD8|1|A|A|32KD8|1|A|U|20cWW
2KD8|1|A|A|32KD8|1|A|U|4s35
2KD8|1|A|C|172KD8|1|A|C|170BPh
2KD8|1|A|C|172KD8|1|A|C|18s35
2KD8|1|A|C|172KD8|1|A|G|16s53
2KD8|1|A|C|172KD8|1|A|G|6cWW
2KD8|1|A|C|182KD8|1|A|A|19s35
2KD8|1|A|C|182KD8|1|A|C|17s53
2KD8|1|A|C|182KD8|1|A|C|180BPh
2KD8|1|A|C|182KD8|1|A|G|5cWW
2KD8|1|A|C|182KD8|1|A|G|6s55
2KD8|1|A|C|212KD8|1|A|A|3ns55
2KD8|1|A|C|212KD8|1|A|C|210BPh
2KD8|1|A|C|212KD8|1|A|C|22s35
2KD8|1|A|C|212KD8|1|A|G|2cWW
2KD8|1|A|C|212KD8|1|A|U|20s53
2KD8|1|A|C|222KD8|1|A|C|21s53
2KD8|1|A|C|222KD8|1|A|C|220BPh
2KD8|1|A|C|222KD8|1|A|G|1cWW
2KD8|1|A|C|222KD8|1|A|G|2s55
2KD8|1|A|G|12KD8|1|A|C|22cWW
2KD8|1|A|G|12KD8|1|A|G|2s35
2KD8|1|A|G|102KD8|1|A|G|100BPh
2KD8|1|A|G|102KD8|1|A|G|121BPh
2KD8|1|A|G|112KD8|1|A|G|10
2KD8|1|A|G|112KD8|1|A|G|110BPh
2KD8|1|A|G|112KD8|1|A|U|13ns35
2KD8|1|A|G|122KD8|1|A|U|13ns35
2KD8|1|A|G|162KD8|1|A|A|15s53
2KD8|1|A|G|162KD8|1|A|C|17s35
2KD8|1|A|G|162KD8|1|A|G|160BPh
2KD8|1|A|G|162KD8|1|A|U|7cWW
2KD8|1|A|G|162KD8|1|A|U|8s55
2KD8|1|A|G|22KD8|1|A|A|3s35
2KD8|1|A|G|22KD8|1|A|C|21cWW
2KD8|1|A|G|22KD8|1|A|C|22s55
2KD8|1|A|G|22KD8|1|A|G|1s53
2KD8|1|A|G|22KD8|1|A|G|20BPh
2KD8|1|A|G|52KD8|1|A|A|19s55
2KD8|1|A|G|52KD8|1|A|C|18cWW
2KD8|1|A|G|52KD8|1|A|G|50BPh
2KD8|1|A|G|52KD8|1|A|G|6s35
2KD8|1|A|G|52KD8|1|A|U|4s53
2KD8|1|A|G|62KD8|1|A|C|17cWW
2KD8|1|A|G|62KD8|1|A|C|18s55
2KD8|1|A|G|62KD8|1|A|G|5s53
2KD8|1|A|G|62KD8|1|A|G|60BPh
2KD8|1|A|G|62KD8|1|A|U|7s35
2KD8|1|A|G|92KD8|1|A|A|15s55
2KD8|1|A|G|92KD8|1|A|G|9n0BP
2KD8|1|A|G|92KD8|1|A|U|14cWW
2KD8|1|A|G|92KD8|1|A|U|8s53
2KD8|1|A|U|132KD8|1|A|G|11ns53
2KD8|1|A|U|132KD8|1|A|G|12ns53
2KD8|1|A|U|132KD8|1|A|U|130BPh
2KD8|1|A|U|132KD8|1|A|U|14s35
2KD8|1|A|U|142KD8|1|A|A|15s35
2KD8|1|A|U|142KD8|1|A|G|9cWW
2KD8|1|A|U|142KD8|1|A|U|13s53n9BP
2KD8|1|A|U|142KD8|1|A|U|140BPh
2KD8|1|A|U|202KD8|1|A|A|19s53
2KD8|1|A|U|202KD8|1|A|A|3cWW
2KD8|1|A|U|202KD8|1|A|C|21s35
2KD8|1|A|U|202KD8|1|A|U|200BPh
2KD8|1|A|U|42KD8|1|A|A|19cWW
2KD8|1|A|U|42KD8|1|A|A|3s53
2KD8|1|A|U|42KD8|1|A|G|5s35
2KD8|1|A|U|42KD8|1|A|U|40BPh
2KD8|1|A|U|72KD8|1|A|G|16cWW
2KD8|1|A|U|72KD8|1|A|G|6s53
2KD8|1|A|U|72KD8|1|A|U|8s35
2KD8|1|A|U|82KD8|1|A|A|15cWW
2KD8|1|A|U|82KD8|1|A|G|16s55
2KD8|1|A|U|82KD8|1|A|G|9s35
2KD8|1|A|U|82KD8|1|A|U|7s53
2KD8|1|A|U|82KD8|1|A|U|80BPh


Base-PairsCount (9)Relative Frequency
cWW91.000
Base-PhosphateCount (19)Relative Frequency
1BPh10.053
0BPh180.947
Base-StackingCount (12)Relative Frequency
s5370.583
s5550.417

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)