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NDB ID: 2KPC  PDB ID: 2KPC 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2KPC|1|A|A|172KPC|1|A|A|170BPh
2KPC|1|A|A|172KPC|1|A|C|16s53
2KPC|1|A|A|172KPC|1|A|G|2s55
2KPC|1|A|A|172KPC|1|A|U|1cWW
2KPC|1|A|A|32KPC|1|A|A|30BPh
2KPC|1|A|A|32KPC|1|A|C|16s55
2KPC|1|A|A|32KPC|1|A|G|2s53
2KPC|1|A|A|32KPC|1|A|G|4s35
2KPC|1|A|A|32KPC|1|A|U|15cWW
2KPC|1|A|A|62KPC|1|A|A|60BPh
2KPC|1|A|A|62KPC|1|A|C|5s53
2KPC|1|A|A|62KPC|1|A|C|7s35
2KPC|1|A|A|62KPC|1|A|G|13s55
2KPC|1|A|A|62KPC|1|A|U|12cWW
2KPC|1|A|A|82KPC|1|A|A|8n0BP
2KPC|1|A|A|82KPC|1|A|C|7s53
2KPC|1|A|A|82KPC|1|A|G|9s35
2KPC|1|A|A|82KPC|1|A|U|11ns55
2KPC|1|A|C|142KPC|1|A|C|140BPh
2KPC|1|A|C|142KPC|1|A|G|13s53
2KPC|1|A|C|142KPC|1|A|G|4cWW
2KPC|1|A|C|142KPC|1|A|U|15s35
2KPC|1|A|C|162KPC|1|A|A|17s35
2KPC|1|A|C|162KPC|1|A|A|3s55
2KPC|1|A|C|162KPC|1|A|C|160BPh
2KPC|1|A|C|162KPC|1|A|G|2cWW
2KPC|1|A|C|162KPC|1|A|U|15s53
2KPC|1|A|C|52KPC|1|A|A|6s35
2KPC|1|A|C|52KPC|1|A|C|50BPh
2KPC|1|A|C|52KPC|1|A|G|13cWW
2KPC|1|A|C|52KPC|1|A|G|4s53
2KPC|1|A|C|72KPC|1|A|A|6s53
2KPC|1|A|C|72KPC|1|A|A|8s35
2KPC|1|A|C|72KPC|1|A|C|70BPh
2KPC|1|A|C|72KPC|1|A|U|11ncWW
2KPC|1|A|C|72KPC|1|A|U|12ncWW
2KPC|1|A|G|132KPC|1|A|A|6s55
2KPC|1|A|G|132KPC|1|A|C|14s35
2KPC|1|A|G|132KPC|1|A|C|5cWW
2KPC|1|A|G|132KPC|1|A|G|130BPh
2KPC|1|A|G|132KPC|1|A|U|12s53
2KPC|1|A|G|22KPC|1|A|A|17s55
2KPC|1|A|G|22KPC|1|A|A|3s35
2KPC|1|A|G|22KPC|1|A|C|16cWW
2KPC|1|A|G|22KPC|1|A|G|20BPh
2KPC|1|A|G|22KPC|1|A|U|1s53
2KPC|1|A|G|42KPC|1|A|A|3s53
2KPC|1|A|G|42KPC|1|A|C|14cWW
2KPC|1|A|G|42KPC|1|A|C|5s35
2KPC|1|A|G|42KPC|1|A|G|40BPh
2KPC|1|A|G|42KPC|1|A|U|15s55
2KPC|1|A|G|92KPC|1|A|A|8s53
2KPC|1|A|G|92KPC|1|A|G|90BPh
2KPC|1|A|U|12KPC|1|A|A|17cWW
2KPC|1|A|U|12KPC|1|A|G|2s35
2KPC|1|A|U|12KPC|1|A|U|10BPh
2KPC|1|A|U|102KPC|1|A|U|10
2KPC|1|A|U|112KPC|1|A|A|8ns55
2KPC|1|A|U|112KPC|1|A|C|7ncWW
2KPC|1|A|U|112KPC|1|A|U|10
2KPC|1|A|U|112KPC|1|A|U|110BPh
2KPC|1|A|U|112KPC|1|A|U|12s35
2KPC|1|A|U|122KPC|1|A|A|6cWW
2KPC|1|A|U|122KPC|1|A|C|7ncWW
2KPC|1|A|U|122KPC|1|A|G|13s35
2KPC|1|A|U|122KPC|1|A|U|11s53
2KPC|1|A|U|122KPC|1|A|U|120BPh
2KPC|1|A|U|152KPC|1|A|A|3cWW
2KPC|1|A|U|152KPC|1|A|C|14s53
2KPC|1|A|U|152KPC|1|A|C|16s35
2KPC|1|A|U|152KPC|1|A|G|4s55
2KPC|1|A|U|152KPC|1|A|U|150BPh


Base-PairsCount (6)Relative Frequency
cWW61.000
Base-PhosphateCount (15)Relative Frequency
0BPh151.000
Base-StackingCount (13)Relative Frequency
s5390.692
s5540.308

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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