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NDB ID: 2KRP  PDB ID: 2KRP 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2KRP|1|A|A|112KRP|1|A|A|12
2KRP|1|A|A|112KRP|1|A|G|10
2KRP|1|A|A|122KRP|1|A|A|11
2KRP|1|A|A|122KRP|1|A|C|13s35
2KRP|1|A|A|122KRP|1|A|C|6cWW
2KRP|1|A|A|122KRP|1|A|G|10s55
2KRP|1|A|A|162KRP|1|A|A|160BPh
2KRP|1|A|A|162KRP|1|A|G|15s53
2KRP|1|A|A|162KRP|1|A|G|17s35
2KRP|1|A|A|162KRP|1|A|U|2cWW
2KRP|1|A|A|82KRP|1|A|A|80BPh
2KRP|1|A|C|12KRP|1|A|C|10BPh
2KRP|1|A|C|12KRP|1|A|G|17cWW
2KRP|1|A|C|12KRP|1|A|U|2s35
2KRP|1|A|C|132KRP|1|A|A|12s53
2KRP|1|A|C|132KRP|1|A|C|130BPh
2KRP|1|A|C|132KRP|1|A|C|14s35
2KRP|1|A|C|132KRP|1|A|G|5cWW
2KRP|1|A|C|142KRP|1|A|C|13s53
2KRP|1|A|C|142KRP|1|A|C|140BPh
2KRP|1|A|C|142KRP|1|A|G|15s35
2KRP|1|A|C|142KRP|1|A|G|4cWW
2KRP|1|A|C|142KRP|1|A|G|5ns55
2KRP|1|A|C|32KRP|1|A|C|30BPh
2KRP|1|A|C|32KRP|1|A|G|15cWW
2KRP|1|A|C|32KRP|1|A|G|4s35
2KRP|1|A|C|32KRP|1|A|U|2s53
2KRP|1|A|C|62KRP|1|A|A|12cWW
2KRP|1|A|C|62KRP|1|A|C|60BPh
2KRP|1|A|C|62KRP|1|A|G|5s53
2KRP|1|A|C|62KRP|1|A|U|7s35
2KRP|1|A|C|92KRP|1|A|A|8n7BP
2KRP|1|A|C|92KRP|1|A|C|9n0BP
2KRP|1|A|C|92KRP|1|A|G|10s53
2KRP|1|A|C|92KRP|1|A|U|7ns53
2KRP|1|A|G|102KRP|1|A|A|111BPh
2KRP|1|A|G|102KRP|1|A|A|12s55
2KRP|1|A|G|102KRP|1|A|C|9s35
2KRP|1|A|G|152KRP|1|A|A|16s35
2KRP|1|A|G|152KRP|1|A|C|14s53
2KRP|1|A|G|152KRP|1|A|C|3cWW
2KRP|1|A|G|152KRP|1|A|G|150BPh
2KRP|1|A|G|152KRP|1|A|G|4s55
2KRP|1|A|G|172KRP|1|A|A|16s53
2KRP|1|A|G|172KRP|1|A|C|1cWW
2KRP|1|A|G|172KRP|1|A|G|170BPh
2KRP|1|A|G|172KRP|1|A|U|2s55
2KRP|1|A|G|42KRP|1|A|C|14cWW
2KRP|1|A|G|42KRP|1|A|C|3s53
2KRP|1|A|G|42KRP|1|A|G|15s55
2KRP|1|A|G|42KRP|1|A|G|40BPh
2KRP|1|A|G|42KRP|1|A|G|5s35
2KRP|1|A|G|52KRP|1|A|C|13cWW
2KRP|1|A|G|52KRP|1|A|C|14ns55
2KRP|1|A|G|52KRP|1|A|C|6s35
2KRP|1|A|G|52KRP|1|A|G|4s53
2KRP|1|A|G|52KRP|1|A|G|50BPh
2KRP|1|A|U|22KRP|1|A|A|16cWW
2KRP|1|A|U|22KRP|1|A|C|1s53
2KRP|1|A|U|22KRP|1|A|C|3s35
2KRP|1|A|U|22KRP|1|A|G|17s55
2KRP|1|A|U|22KRP|1|A|U|20BPh
2KRP|1|A|U|72KRP|1|A|C|6s53
2KRP|1|A|U|72KRP|1|A|C|9ns35
2KRP|1|A|U|72KRP|1|A|U|70BPh


Base-PairsCount (6)Relative Frequency
cWW61.000
Base-PhosphateCount (14)Relative Frequency
1BPh10.071
0BPh130.929
Base-StackingCount (7)Relative Frequency
s5340.571
s5530.429

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)