A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: 2KRV  PDB ID: 2KRV 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2KRV|1|A|A|112KRV|1|A|A|12
2KRV|1|A|A|112KRV|1|A|G|10
2KRV|1|A|A|122KRV|1|A|A|11
2KRV|1|A|A|122KRV|1|A|C|13s35
2KRV|1|A|A|122KRV|1|A|G|10s55
2KRV|1|A|A|162KRV|1|A|A|160BPh
2KRV|1|A|A|162KRV|1|A|G|15s53
2KRV|1|A|A|162KRV|1|A|G|17s35
2KRV|1|A|A|162KRV|1|A|U|2cWW
2KRV|1|A|C|12KRV|1|A|C|10BPh
2KRV|1|A|C|12KRV|1|A|G|17cWW
2KRV|1|A|C|12KRV|1|A|U|2s35
2KRV|1|A|C|132KRV|1|A|A|12s53
2KRV|1|A|C|132KRV|1|A|C|130BPh
2KRV|1|A|C|132KRV|1|A|C|14ns35
2KRV|1|A|C|132KRV|1|A|G|5cWW
2KRV|1|A|C|142KRV|1|A|C|13ns53
2KRV|1|A|C|142KRV|1|A|C|140BPh
2KRV|1|A|C|142KRV|1|A|G|4cWW
2KRV|1|A|C|142KRV|1|A|G|5s55
2KRV|1|A|C|32KRV|1|A|C|30BPh
2KRV|1|A|C|32KRV|1|A|G|15cWW
2KRV|1|A|C|32KRV|1|A|G|4s35
2KRV|1|A|C|32KRV|1|A|U|2s53
2KRV|1|A|C|92KRV|1|A|C|90BPh
2KRV|1|A|C|92KRV|1|A|G|10s53
2KRV|1|A|C|92KRV|1|A|U|7ns53
2KRV|1|A|G|102KRV|1|A|A|11n1BP
2KRV|1|A|G|102KRV|1|A|A|12s55
2KRV|1|A|G|102KRV|1|A|C|9s35
2KRV|1|A|G|152KRV|1|A|A|16s35
2KRV|1|A|G|152KRV|1|A|C|3cWW
2KRV|1|A|G|152KRV|1|A|G|150BPh
2KRV|1|A|G|152KRV|1|A|G|4s55
2KRV|1|A|G|172KRV|1|A|A|16s53
2KRV|1|A|G|172KRV|1|A|C|1cWW
2KRV|1|A|G|172KRV|1|A|G|170BPh
2KRV|1|A|G|172KRV|1|A|U|2s55
2KRV|1|A|G|42KRV|1|A|C|14cWW
2KRV|1|A|G|42KRV|1|A|C|3s53
2KRV|1|A|G|42KRV|1|A|G|15s55
2KRV|1|A|G|42KRV|1|A|G|40BPh
2KRV|1|A|G|42KRV|1|A|G|5ns35
2KRV|1|A|G|52KRV|1|A|C|13cWW
2KRV|1|A|G|52KRV|1|A|C|14s55
2KRV|1|A|G|52KRV|1|A|G|4ns53
2KRV|1|A|G|52KRV|1|A|G|50BPh
2KRV|1|A|U|22KRV|1|A|A|16cWW
2KRV|1|A|U|22KRV|1|A|C|1s53
2KRV|1|A|U|22KRV|1|A|C|3s35
2KRV|1|A|U|22KRV|1|A|G|17s55
2KRV|1|A|U|22KRV|1|A|U|20BPh
2KRV|1|A|U|72KRV|1|A|C|9ns35
2KRV|1|A|U|72KRV|1|A|U|70BPh


Base-PairsCount (5)Relative Frequency
cWW51.000
Base-PhosphateCount (12)Relative Frequency
0BPh121.000
Base-StackingCount (7)Relative Frequency
s5330.429
s5540.571

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)