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NDB ID: 2KXM  PDB ID: 2KXM 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2KXM|1|A|A|162KXM|1|A|A|160BPh
2KXM|1|A|A|162KXM|1|A|U|14tHS
2KXM|1|A|A|162KXM|1|A|U|15s53
2KXM|1|A|A|162KXM|1|A|U|18s35
2KXM|1|A|A|172KXM|1|A|C|6s35
2KXM|1|A|A|172KXM|1|A|G|5
2KXM|1|A|A|172KXM|1|A|U|8
2KXM|1|A|A|242KXM|1|A|A|240BPh
2KXM|1|A|A|242KXM|1|A|C|23s53
2KXM|1|A|A|242KXM|1|A|G|25s35
2KXM|1|A|A|242KXM|1|A|G|5s55
2KXM|1|A|A|242KXM|1|A|U|4cWW
2KXM|1|A|C|112KXM|1|A|C|110BPh
2KXM|1|A|C|112KXM|1|A|C|12s35
2KXM|1|A|C|112KXM|1|A|G|20cWW
2KXM|1|A|C|112KXM|1|A|U|10s53
2KXM|1|A|C|122KXM|1|A|C|11s53
2KXM|1|A|C|122KXM|1|A|C|120BPh
2KXM|1|A|C|122KXM|1|A|G|19cWW
2KXM|1|A|C|122KXM|1|A|G|20s55
2KXM|1|A|C|122KXM|1|A|U|13s35
2KXM|1|A|C|222KXM|1|A|C|220BPh
2KXM|1|A|C|222KXM|1|A|C|23s35
2KXM|1|A|C|222KXM|1|A|G|9cWW
2KXM|1|A|C|222KXM|1|A|U|21s53
2KXM|1|A|C|232KXM|1|A|A|24s35
2KXM|1|A|C|232KXM|1|A|C|22s53
2KXM|1|A|C|232KXM|1|A|C|230BPh
2KXM|1|A|C|232KXM|1|A|G|5cWW
2KXM|1|A|C|232KXM|1|A|G|9ns55
2KXM|1|A|C|272KXM|1|A|C|27n0BP
2KXM|1|A|C|272KXM|1|A|G|1cWW
2KXM|1|A|C|272KXM|1|A|G|2ns55
2KXM|1|A|C|272KXM|1|A|U|26s53
2KXM|1|A|C|32KXM|1|A|C|30BPh
2KXM|1|A|C|32KXM|1|A|G|2s53
2KXM|1|A|C|32KXM|1|A|G|25cWW
2KXM|1|A|C|32KXM|1|A|U|4s35
2KXM|1|A|C|62KXM|1|A|A|17s53
2KXM|1|A|C|62KXM|1|A|C|60BPh
2KXM|1|A|C|62KXM|1|A|G|58BPh
2KXM|1|A|G|12KXM|1|A|C|27cWW
2KXM|1|A|G|12KXM|1|A|G|2s35
2KXM|1|A|G|192KXM|1|A|C|12cWW
2KXM|1|A|G|192KXM|1|A|G|190BPh
2KXM|1|A|G|192KXM|1|A|G|20s35
2KXM|1|A|G|192KXM|1|A|U|13s55
2KXM|1|A|G|192KXM|1|A|U|18s53
2KXM|1|A|G|22KXM|1|A|C|27ns55
2KXM|1|A|G|22KXM|1|A|C|3s35
2KXM|1|A|G|22KXM|1|A|G|1s53
2KXM|1|A|G|22KXM|1|A|G|20BPh
2KXM|1|A|G|22KXM|1|A|U|26cWW
2KXM|1|A|G|202KXM|1|A|C|11cWW
2KXM|1|A|G|202KXM|1|A|C|12s55
2KXM|1|A|G|202KXM|1|A|G|19s53
2KXM|1|A|G|202KXM|1|A|U|21s35
2KXM|1|A|G|252KXM|1|A|A|24s53
2KXM|1|A|G|252KXM|1|A|C|3cWW
2KXM|1|A|G|252KXM|1|A|G|250BPh
2KXM|1|A|G|252KXM|1|A|U|26s35
2KXM|1|A|G|252KXM|1|A|U|4s55
2KXM|1|A|G|52KXM|1|A|A|24s55
2KXM|1|A|G|52KXM|1|A|C|23cWW
2KXM|1|A|G|52KXM|1|A|G|50BPh
2KXM|1|A|G|52KXM|1|A|G|9s35
2KXM|1|A|G|52KXM|1|A|U|4ns53
2KXM|1|A|G|92KXM|1|A|C|22cWW
2KXM|1|A|G|92KXM|1|A|C|23ns55
2KXM|1|A|G|92KXM|1|A|G|5s53
2KXM|1|A|G|92KXM|1|A|U|10s35
2KXM|1|A|U|102KXM|1|A|C|11s35
2KXM|1|A|U|102KXM|1|A|G|9s53
2KXM|1|A|U|102KXM|1|A|U|100BPh
2KXM|1|A|U|102KXM|1|A|U|21cWW
2KXM|1|A|U|102KXM|1|A|U|8
2KXM|1|A|U|132KXM|1|A|C|12s53
2KXM|1|A|U|132KXM|1|A|G|19s55
2KXM|1|A|U|132KXM|1|A|U|130BPh
2KXM|1|A|U|132KXM|1|A|U|14s35
2KXM|1|A|U|132KXM|1|A|U|18cWW
2KXM|1|A|U|142KXM|1|A|A|16tSH
2KXM|1|A|U|142KXM|1|A|A|175BPh
2KXM|1|A|U|142KXM|1|A|U|13s53
2KXM|1|A|U|142KXM|1|A|U|140BPh
2KXM|1|A|U|142KXM|1|A|U|18ns55
2KXM|1|A|U|152KXM|1|A|A|16s35
2KXM|1|A|U|152KXM|1|A|U|14
2KXM|1|A|U|152KXM|1|A|U|150BPh
2KXM|1|A|U|182KXM|1|A|A|16s53
2KXM|1|A|U|182KXM|1|A|A|179BPh
2KXM|1|A|U|182KXM|1|A|G|19s35
2KXM|1|A|U|182KXM|1|A|U|13cWW
2KXM|1|A|U|182KXM|1|A|U|14ns55
2KXM|1|A|U|182KXM|1|A|U|180BPh
2KXM|1|A|U|212KXM|1|A|C|22s35
2KXM|1|A|U|212KXM|1|A|G|20s53
2KXM|1|A|U|212KXM|1|A|U|10cWW
2KXM|1|A|U|212KXM|1|A|U|210BPh
2KXM|1|A|U|262KXM|1|A|C|27s35
2KXM|1|A|U|262KXM|1|A|G|2cWW
2KXM|1|A|U|262KXM|1|A|G|25s53
2KXM|1|A|U|262KXM|1|A|U|260BPh
2KXM|1|A|U|42KXM|1|A|A|24cWW
2KXM|1|A|U|42KXM|1|A|C|3s53
2KXM|1|A|U|42KXM|1|A|G|25s55
2KXM|1|A|U|42KXM|1|A|G|5ns35
2KXM|1|A|U|72KXM|1|A|G|9n0BP
2KXM|1|A|U|82KXM|1|A|A|179BPh
2KXM|1|A|U|82KXM|1|A|U|10


Base-PairsCount (11)Relative Frequency
cWW100.909
tHS10.091
Base-PhosphateCount (23)Relative Frequency
5BPh10.043
8BPh10.043
9BPh20.087
0BPh190.826
Base-StackingCount (11)Relative Frequency
s5370.636
s5540.364

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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