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NDB ID: 2L1V  PDB ID: 2L1V 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2L1V|1|A|A|122L1V|1|A|A|120BPh
2L1V|1|A|A|122L1V|1|A|A|35ns55
2L1V|1|A|A|122L1V|1|A|G|13s35
2L1V|1|A|A|122L1V|1|A|U|11s53
2L1V|1|A|A|122L1V|1|A|U|14
2L1V|1|A|A|122L1V|1|A|U|34cWW
2L1V|1|A|A|162L1V|1|A|A|160BPh
2L1V|1|A|A|162L1V|1|A|A|18s35
2L1V|1|A|A|162L1V|1|A|A|352BPh
2L1V|1|A|A|162L1V|1|A|U|14
2L1V|1|A|A|162L1V|1|A|U|17
2L1V|1|A|A|162L1V|1|A|U|34cWS
2L1V|1|A|A|182L1V|1|A|A|16s53
2L1V|1|A|A|182L1V|1|A|C|19s35
2L1V|1|A|A|182L1V|1|A|G|13tWS
2L1V|1|A|A|182L1V|1|A|U|14ns55
2L1V|1|A|A|182L1V|1|A|U|15
2L1V|1|A|A|182L1V|1|A|U|17
2L1V|1|A|A|182L1V|1|A|U|34
2L1V|1|A|A|252L1V|1|A|A|250BPh
2L1V|1|A|A|252L1V|1|A|A|3
2L1V|1|A|A|252L1V|1|A|G|4ns55
2L1V|1|A|A|252L1V|1|A|U|24ncHS
2L1V|1|A|A|252L1V|1|A|U|26ns55
2L1V|1|A|A|272L1V|1|A|A|27n0BP
2L1V|1|A|A|272L1V|1|A|A|28s35
2L1V|1|A|A|272L1V|1|A|A|5ncHS
2L1V|1|A|A|272L1V|1|A|C|23cWS
2L1V|1|A|A|272L1V|1|A|G|6s35
2L1V|1|A|A|272L1V|1|A|U|26s53
2L1V|1|A|A|282L1V|1|A|A|27s53
2L1V|1|A|A|282L1V|1|A|A|29s35
2L1V|1|A|A|282L1V|1|A|C|23
2L1V|1|A|A|282L1V|1|A|G|6ns35
2L1V|1|A|A|282L1V|1|A|U|22cWS
2L1V|1|A|A|292L1V|1|A|A|28s53
2L1V|1|A|A|292L1V|1|A|A|30s35
2L1V|1|A|A|292L1V|1|A|C|21cWS
2L1V|1|A|A|292L1V|1|A|U|22s55
2L1V|1|A|A|32L1V|1|A|A|25
2L1V|1|A|A|32L1V|1|A|A|30BPh
2L1V|1|A|A|32L1V|1|A|G|1
2L1V|1|A|A|32L1V|1|A|G|4s35
2L1V|1|A|A|32L1V|1|A|U|24cWW
2L1V|1|A|A|302L1V|1|A|A|29s53
2L1V|1|A|A|302L1V|1|A|A|300BPh
2L1V|1|A|A|302L1V|1|A|A|31ns35
2L1V|1|A|A|302L1V|1|A|C|21ns55
2L1V|1|A|A|302L1V|1|A|G|6ns53
2L1V|1|A|A|302L1V|1|A|G|7tWS
2L1V|1|A|A|302L1V|1|A|U|8s35
2L1V|1|A|A|312L1V|1|A|A|30ns53
2L1V|1|A|A|312L1V|1|A|A|32s35
2L1V|1|A|A|312L1V|1|A|C|20cWS
2L1V|1|A|A|312L1V|1|A|U|8cHW
2L1V|1|A|A|322L1V|1|A|A|31s53
2L1V|1|A|A|322L1V|1|A|A|320BPh
2L1V|1|A|A|322L1V|1|A|C|20
2L1V|1|A|A|322L1V|1|A|C|33s35
2L1V|1|A|A|322L1V|1|A|U|8ncHW
2L1V|1|A|A|322L1V|1|A|U|9ns35
2L1V|1|A|A|352L1V|1|A|A|12ns55
2L1V|1|A|A|352L1V|1|A|A|350BPh
2L1V|1|A|A|352L1V|1|A|A|36s35
2L1V|1|A|A|352L1V|1|A|U|11cWW
2L1V|1|A|A|352L1V|1|A|U|34ns53
2L1V|1|A|A|362L1V|1|A|A|35s53
2L1V|1|A|A|362L1V|1|A|A|360BPh
2L1V|1|A|A|52L1V|1|A|A|27ncSH
2L1V|1|A|A|52L1V|1|A|A|50BPh
2L1V|1|A|A|52L1V|1|A|C|23s55
2L1V|1|A|A|52L1V|1|A|G|4s53
2L1V|1|A|A|52L1V|1|A|G|6s35
2L1V|1|A|A|52L1V|1|A|U|22cWW
2L1V|1|A|C|102L1V|1|A|C|100BPh
2L1V|1|A|C|102L1V|1|A|U|9s33
2L1V|1|A|C|192L1V|1|A|A|18s53
2L1V|1|A|C|192L1V|1|A|C|190BPh
2L1V|1|A|C|192L1V|1|A|C|20ns35
2L1V|1|A|C|202L1V|1|A|A|31cSW
2L1V|1|A|C|202L1V|1|A|C|19ns53
2L1V|1|A|C|202L1V|1|A|C|200BPh
2L1V|1|A|C|202L1V|1|A|C|21s35
2L1V|1|A|C|202L1V|1|A|G|7cWW
2L1V|1|A|C|212L1V|1|A|A|29cSW
2L1V|1|A|C|212L1V|1|A|A|30ns55
2L1V|1|A|C|212L1V|1|A|C|20s53
2L1V|1|A|C|212L1V|1|A|C|210BPh
2L1V|1|A|C|212L1V|1|A|G|6cWW
2L1V|1|A|C|212L1V|1|A|G|7s55
2L1V|1|A|C|212L1V|1|A|U|22s35
2L1V|1|A|C|232L1V|1|A|A|27cSW
2L1V|1|A|C|232L1V|1|A|A|5s55
2L1V|1|A|C|232L1V|1|A|C|230BPh
2L1V|1|A|C|232L1V|1|A|G|4cWW
2L1V|1|A|C|232L1V|1|A|U|22s53
2L1V|1|A|C|232L1V|1|A|U|24s35
2L1V|1|A|C|332L1V|1|A|A|32s53
2L1V|1|A|C|332L1V|1|A|C|330BPh
2L1V|1|A|C|332L1V|1|A|G|13cWW
2L1V|1|A|C|332L1V|1|A|U|34s35
2L1V|1|A|G|12L1V|1|A|A|3
2L1V|1|A|G|12L1V|1|A|G|1n0BP
2L1V|1|A|G|132L1V|1|A|A|12s53
2L1V|1|A|G|132L1V|1|A|A|18tSW
2L1V|1|A|G|132L1V|1|A|C|33cWW
2L1V|1|A|G|132L1V|1|A|U|14ns55
2L1V|1|A|G|132L1V|1|A|U|34s55
2L1V|1|A|G|42L1V|1|A|A|25ns55
2L1V|1|A|G|42L1V|1|A|A|3s53
2L1V|1|A|G|42L1V|1|A|A|5s35
2L1V|1|A|G|42L1V|1|A|C|23cWW
2L1V|1|A|G|42L1V|1|A|G|40BPh
2L1V|1|A|G|42L1V|1|A|U|24s55
2L1V|1|A|G|42L1V|1|A|U|26ncSH
2L1V|1|A|G|62L1V|1|A|A|27s53
2L1V|1|A|G|62L1V|1|A|A|28ns53
2L1V|1|A|G|62L1V|1|A|A|30ns35
2L1V|1|A|G|62L1V|1|A|A|5s53
2L1V|1|A|G|62L1V|1|A|C|21cWW
2L1V|1|A|G|62L1V|1|A|G|60BPh
2L1V|1|A|G|62L1V|1|A|G|7s35
2L1V|1|A|G|62L1V|1|A|U|22ns55
2L1V|1|A|G|72L1V|1|A|A|30tSW
2L1V|1|A|G|72L1V|1|A|C|20cWW
2L1V|1|A|G|72L1V|1|A|C|21s55
2L1V|1|A|G|72L1V|1|A|G|6s53
2L1V|1|A|G|72L1V|1|A|G|70BPh
2L1V|1|A|G|72L1V|1|A|U|8ns35
2L1V|1|A|U|112L1V|1|A|A|12s35
2L1V|1|A|U|112L1V|1|A|A|35cWW
2L1V|1|A|U|112L1V|1|A|U|11n0BP
2L1V|1|A|U|142L1V|1|A|A|12
2L1V|1|A|U|142L1V|1|A|A|18ns55
2L1V|1|A|U|142L1V|1|A|G|13ns55
2L1V|1|A|U|142L1V|1|A|U|14
2L1V|1|A|U|152L1V|1|A|U|15
2L1V|1|A|U|172L1V|1|A|A|16
2L1V|1|A|U|172L1V|1|A|A|18
2L1V|1|A|U|172L1V|1|A|U|17
2L1V|1|A|U|222L1V|1|A|A|28cSW
2L1V|1|A|U|222L1V|1|A|A|29s55
2L1V|1|A|U|222L1V|1|A|A|5cWW
2L1V|1|A|U|222L1V|1|A|C|21s53
2L1V|1|A|U|222L1V|1|A|C|23s35
2L1V|1|A|U|222L1V|1|A|G|6ns55
2L1V|1|A|U|222L1V|1|A|U|220BPh
2L1V|1|A|U|242L1V|1|A|A|25ncSH
2L1V|1|A|U|242L1V|1|A|A|3cWW
2L1V|1|A|U|242L1V|1|A|C|23s53
2L1V|1|A|U|242L1V|1|A|G|4s55
2L1V|1|A|U|242L1V|1|A|U|240BPh
2L1V|1|A|U|262L1V|1|A|A|25ns55
2L1V|1|A|U|262L1V|1|A|A|27s35
2L1V|1|A|U|262L1V|1|A|C|23
2L1V|1|A|U|262L1V|1|A|G|4ncHS
2L1V|1|A|U|342L1V|1|A|A|12cWW
2L1V|1|A|U|342L1V|1|A|A|16cSW
2L1V|1|A|U|342L1V|1|A|A|35ns35
2L1V|1|A|U|342L1V|1|A|C|33s53
2L1V|1|A|U|342L1V|1|A|G|13s55
2L1V|1|A|U|342L1V|1|A|U|340BPh
2L1V|1|A|U|82L1V|1|A|A|30s53
2L1V|1|A|U|82L1V|1|A|A|31cWH
2L1V|1|A|U|82L1V|1|A|A|32ncWH
2L1V|1|A|U|82L1V|1|A|G|7ns53
2L1V|1|A|U|82L1V|1|A|U|80BPh
2L1V|1|A|U|82L1V|1|A|U|9s35
2L1V|1|A|U|92L1V|1|A|A|32ns53
2L1V|1|A|U|92L1V|1|A|C|10s33
2L1V|1|A|U|92L1V|1|A|U|8s53


Base-PairsCount (16)Relative Frequency
cWW80.500
cWH10.062
cWS50.312
tWS20.125
Base-PhosphateCount (23)Relative Frequency
2BPh10.043
0BPh220.957
Base-StackingCount (10)Relative Frequency
s3310.100
s5340.400
s5550.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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