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As of 11-May-2022 number of released structures: 12077
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NDB ID: 2L2J  PDB ID: 2L2J 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2L2J|1|A|A|152L2J|1|A|A|150BPh
2L2J|1|A|A|152L2J|1|A|A|16s35
2L2J|1|A|A|152L2J|1|A|C|28ncWW
2L2J|1|A|A|152L2J|1|A|C|29s55
2L2J|1|A|A|152L2J|1|A|G|14s53
2L2J|1|A|A|162L2J|1|A|A|15s53
2L2J|1|A|A|162L2J|1|A|A|16n0BP
2L2J|1|A|A|162L2J|1|A|C|28ns55
2L2J|1|A|A|162L2J|1|A|U|17s35
2L2J|1|A|A|162L2J|1|A|U|27cWW
2L2J|1|A|A|262L2J|1|A|A|260BPh
2L2J|1|A|A|262L2J|1|A|C|18s55
2L2J|1|A|A|262L2J|1|A|G|25s53
2L2J|1|A|A|262L2J|1|A|U|17cWW
2L2J|1|A|A|262L2J|1|A|U|27s35
2L2J|1|A|A|312L2J|1|A|A|310BPh
2L2J|1|A|A|312L2J|1|A|C|30s53
2L2J|1|A|A|312L2J|1|A|C|32s35
2L2J|1|A|A|312L2J|1|A|G|13s55
2L2J|1|A|A|312L2J|1|A|U|12cWW
2L2J|1|A|A|352L2J|1|A|A|350BPh
2L2J|1|A|A|352L2J|1|A|C|36s35
2L2J|1|A|A|352L2J|1|A|G|9s55
2L2J|1|A|A|352L2J|1|A|U|34s53
2L2J|1|A|A|352L2J|1|A|U|8cWW
2L2J|1|A|A|42L2J|1|A|A|40BPh
2L2J|1|A|A|42L2J|1|A|A|5s35
2L2J|1|A|A|42L2J|1|A|G|40s55
2L2J|1|A|A|42L2J|1|A|U|3s53
2L2J|1|A|A|42L2J|1|A|U|39cWW
2L2J|1|A|A|52L2J|1|A|A|4s53
2L2J|1|A|A|52L2J|1|A|A|5n0BP
2L2J|1|A|A|52L2J|1|A|C|38cWW
2L2J|1|A|A|52L2J|1|A|G|6s35
2L2J|1|A|A|52L2J|1|A|U|39s55
2L2J|1|A|C|182L2J|1|A|A|26s55
2L2J|1|A|C|182L2J|1|A|C|180BPh
2L2J|1|A|C|182L2J|1|A|C|19s35
2L2J|1|A|C|182L2J|1|A|G|25cWW
2L2J|1|A|C|182L2J|1|A|U|17s53
2L2J|1|A|C|192L2J|1|A|C|18s53
2L2J|1|A|C|192L2J|1|A|C|190BPh
2L2J|1|A|C|192L2J|1|A|G|24cWW
2L2J|1|A|C|192L2J|1|A|G|25s55
2L2J|1|A|C|192L2J|1|A|U|20s35
2L2J|1|A|C|222L2J|1|A|C|220BPh
2L2J|1|A|C|222L2J|1|A|G|23s53
2L2J|1|A|C|222L2J|1|A|U|20s53
2L2J|1|A|C|222L2J|1|A|U|218BPh
2L2J|1|A|C|282L2J|1|A|A|15ncWW
2L2J|1|A|C|282L2J|1|A|A|16ns55
2L2J|1|A|C|282L2J|1|A|C|280BPh
2L2J|1|A|C|282L2J|1|A|C|29s35
2L2J|1|A|C|282L2J|1|A|G|14ncWW
2L2J|1|A|C|282L2J|1|A|U|27s53
2L2J|1|A|C|292L2J|1|A|A|15s55
2L2J|1|A|C|292L2J|1|A|C|28s53
2L2J|1|A|C|292L2J|1|A|C|290BPh
2L2J|1|A|C|292L2J|1|A|C|30s35
2L2J|1|A|C|292L2J|1|A|G|14cWW
2L2J|1|A|C|302L2J|1|A|A|31s35
2L2J|1|A|C|302L2J|1|A|C|29s53
2L2J|1|A|C|302L2J|1|A|C|300BPh
2L2J|1|A|C|302L2J|1|A|G|13cWW
2L2J|1|A|C|302L2J|1|A|G|14s55
2L2J|1|A|C|322L2J|1|A|A|31s53
2L2J|1|A|C|322L2J|1|A|C|320BPh
2L2J|1|A|C|322L2J|1|A|C|33s35
2L2J|1|A|C|322L2J|1|A|G|11cWW
2L2J|1|A|C|332L2J|1|A|C|32s53
2L2J|1|A|C|332L2J|1|A|C|330BPh
2L2J|1|A|C|332L2J|1|A|G|10cWW
2L2J|1|A|C|332L2J|1|A|G|11s55
2L2J|1|A|C|332L2J|1|A|U|34s35
2L2J|1|A|C|362L2J|1|A|A|35s53
2L2J|1|A|C|362L2J|1|A|C|360BPh
2L2J|1|A|C|362L2J|1|A|C|37s35
2L2J|1|A|C|362L2J|1|A|G|7cWW
2L2J|1|A|C|372L2J|1|A|C|36s53
2L2J|1|A|C|372L2J|1|A|C|370BPh
2L2J|1|A|C|372L2J|1|A|C|38s35
2L2J|1|A|C|372L2J|1|A|G|6cWW
2L2J|1|A|C|372L2J|1|A|G|7s55
2L2J|1|A|C|382L2J|1|A|A|5cWW
2L2J|1|A|C|382L2J|1|A|C|37s53
2L2J|1|A|C|382L2J|1|A|C|380BPh
2L2J|1|A|C|382L2J|1|A|G|6s55
2L2J|1|A|C|382L2J|1|A|U|39s35
2L2J|1|A|C|412L2J|1|A|C|410BPh
2L2J|1|A|C|412L2J|1|A|C|42s35
2L2J|1|A|C|412L2J|1|A|G|2cWW
2L2J|1|A|C|412L2J|1|A|G|40s53
2L2J|1|A|C|422L2J|1|A|C|41s53
2L2J|1|A|C|422L2J|1|A|C|420BPh
2L2J|1|A|C|422L2J|1|A|G|1cWW
2L2J|1|A|C|422L2J|1|A|G|2s55
2L2J|1|A|G|12L2J|1|A|C|42cWW
2L2J|1|A|G|12L2J|1|A|G|10BPh
2L2J|1|A|G|12L2J|1|A|G|2s35
2L2J|1|A|G|102L2J|1|A|C|33cWW
2L2J|1|A|G|102L2J|1|A|G|100BPh
2L2J|1|A|G|102L2J|1|A|G|11s35
2L2J|1|A|G|102L2J|1|A|G|9s53
2L2J|1|A|G|102L2J|1|A|U|34s55
2L2J|1|A|G|112L2J|1|A|C|32cWW
2L2J|1|A|G|112L2J|1|A|C|33s55
2L2J|1|A|G|112L2J|1|A|G|10s53
2L2J|1|A|G|112L2J|1|A|G|110BPh
2L2J|1|A|G|112L2J|1|A|U|12s35
2L2J|1|A|G|132L2J|1|A|A|31s55
2L2J|1|A|G|132L2J|1|A|C|30cWW
2L2J|1|A|G|132L2J|1|A|G|130BPh
2L2J|1|A|G|132L2J|1|A|G|14s35
2L2J|1|A|G|132L2J|1|A|U|12s53
2L2J|1|A|G|142L2J|1|A|A|15s35
2L2J|1|A|G|142L2J|1|A|C|28ncWW
2L2J|1|A|G|142L2J|1|A|C|29cWW
2L2J|1|A|G|142L2J|1|A|C|30s55
2L2J|1|A|G|142L2J|1|A|G|13s53
2L2J|1|A|G|142L2J|1|A|G|140BPh
2L2J|1|A|G|22L2J|1|A|C|41cWW
2L2J|1|A|G|22L2J|1|A|C|42s55
2L2J|1|A|G|22L2J|1|A|G|1s53
2L2J|1|A|G|22L2J|1|A|G|20BPh
2L2J|1|A|G|22L2J|1|A|U|3s35
2L2J|1|A|G|232L2J|1|A|C|22s35
2L2J|1|A|G|232L2J|1|A|G|24s55
2L2J|1|A|G|232L2J|1|A|U|20tWS
2L2J|1|A|G|242L2J|1|A|C|19cWW
2L2J|1|A|G|242L2J|1|A|G|23s55
2L2J|1|A|G|242L2J|1|A|G|240BPh
2L2J|1|A|G|242L2J|1|A|G|25s35
2L2J|1|A|G|242L2J|1|A|U|20s55
2L2J|1|A|G|252L2J|1|A|A|26s35
2L2J|1|A|G|252L2J|1|A|C|18cWW
2L2J|1|A|G|252L2J|1|A|C|19s55
2L2J|1|A|G|252L2J|1|A|G|24s53
2L2J|1|A|G|252L2J|1|A|G|250BPh
2L2J|1|A|G|402L2J|1|A|A|4s55
2L2J|1|A|G|402L2J|1|A|C|41s35
2L2J|1|A|G|402L2J|1|A|G|400BPh
2L2J|1|A|G|402L2J|1|A|U|3cWW
2L2J|1|A|G|402L2J|1|A|U|39s53
2L2J|1|A|G|62L2J|1|A|A|5s53
2L2J|1|A|G|62L2J|1|A|C|37cWW
2L2J|1|A|G|62L2J|1|A|C|38s55
2L2J|1|A|G|62L2J|1|A|G|60BPh
2L2J|1|A|G|62L2J|1|A|G|7s35
2L2J|1|A|G|72L2J|1|A|C|36cWW
2L2J|1|A|G|72L2J|1|A|C|37s55
2L2J|1|A|G|72L2J|1|A|G|6s53
2L2J|1|A|G|72L2J|1|A|G|70BPh
2L2J|1|A|G|72L2J|1|A|U|8s35
2L2J|1|A|G|92L2J|1|A|A|35s55
2L2J|1|A|G|92L2J|1|A|G|10s35
2L2J|1|A|G|92L2J|1|A|G|90BPh
2L2J|1|A|G|92L2J|1|A|U|34cWW
2L2J|1|A|G|92L2J|1|A|U|8s53
2L2J|1|A|U|122L2J|1|A|A|31cWW
2L2J|1|A|U|122L2J|1|A|G|11s53
2L2J|1|A|U|122L2J|1|A|G|13s35
2L2J|1|A|U|122L2J|1|A|U|120BPh
2L2J|1|A|U|172L2J|1|A|A|16s53
2L2J|1|A|U|172L2J|1|A|A|26cWW
2L2J|1|A|U|172L2J|1|A|C|18s35
2L2J|1|A|U|172L2J|1|A|U|170BPh
2L2J|1|A|U|202L2J|1|A|C|19s53
2L2J|1|A|U|202L2J|1|A|C|22s35
2L2J|1|A|U|202L2J|1|A|G|23tSW
2L2J|1|A|U|202L2J|1|A|G|24s55
2L2J|1|A|U|202L2J|1|A|U|200BPh
2L2J|1|A|U|212L2J|1|A|U|20
2L2J|1|A|U|212L2J|1|A|U|210BPh
2L2J|1|A|U|272L2J|1|A|A|16cWW
2L2J|1|A|U|272L2J|1|A|A|26s53
2L2J|1|A|U|272L2J|1|A|C|28s35
2L2J|1|A|U|272L2J|1|A|U|270BPh
2L2J|1|A|U|32L2J|1|A|A|4s35
2L2J|1|A|U|32L2J|1|A|G|2s53
2L2J|1|A|U|32L2J|1|A|G|40cWW
2L2J|1|A|U|32L2J|1|A|U|30BPh
2L2J|1|A|U|342L2J|1|A|A|35s35
2L2J|1|A|U|342L2J|1|A|C|33s53
2L2J|1|A|U|342L2J|1|A|G|10s55
2L2J|1|A|U|342L2J|1|A|G|9cWW
2L2J|1|A|U|342L2J|1|A|U|340BPh
2L2J|1|A|U|392L2J|1|A|A|4cWW
2L2J|1|A|U|392L2J|1|A|A|5s55
2L2J|1|A|U|392L2J|1|A|C|38s53
2L2J|1|A|U|392L2J|1|A|G|40s35
2L2J|1|A|U|392L2J|1|A|U|390BPh
2L2J|1|A|U|82L2J|1|A|A|35cWW
2L2J|1|A|U|82L2J|1|A|G|7s53
2L2J|1|A|U|82L2J|1|A|G|9s35
2L2J|1|A|U|82L2J|1|A|U|80BPh


Base-PairsCount (19)Relative Frequency
cWW180.947
tWS10.053
Base-PhosphateCount (40)Relative Frequency
8BPh10.025
0BPh390.975
Base-StackingCount (29)Relative Frequency
s53140.483
s55150.517

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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