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As of 18-May-2022 number of released structures: 12082
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NDB ID: 2L3E  PDB ID: 2L3E 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2L3E|1|A|A|252L3E|1|A|A|250BPh
2L3E|1|A|A|252L3E|1|A|C|24s53
2L3E|1|A|A|252L3E|1|A|C|26s35
2L3E|1|A|A|252L3E|1|A|G|17s55
2L3E|1|A|A|252L3E|1|A|U|16cWW
2L3E|1|A|A|292L3E|1|A|A|29n0BP
2L3E|1|A|A|292L3E|1|A|A|30s35
2L3E|1|A|A|292L3E|1|A|G|28
2L3E|1|A|A|292L3E|1|A|G|8s55
2L3E|1|A|A|292L3E|1|A|U|7cWW
2L3E|1|A|A|302L3E|1|A|A|29s53
2L3E|1|A|A|302L3E|1|A|A|300BPh
2L3E|1|A|A|302L3E|1|A|A|31s35
2L3E|1|A|A|302L3E|1|A|U|6cWW
2L3E|1|A|A|302L3E|1|A|U|7s55
2L3E|1|A|A|312L3E|1|A|A|30s53
2L3E|1|A|A|312L3E|1|A|A|310BPh
2L3E|1|A|A|312L3E|1|A|A|32s35
2L3E|1|A|A|312L3E|1|A|U|5cWW
2L3E|1|A|A|312L3E|1|A|U|6ns55
2L3E|1|A|A|322L3E|1|A|A|31s53
2L3E|1|A|A|322L3E|1|A|A|320BPh
2L3E|1|A|A|322L3E|1|A|G|33s35
2L3E|1|A|A|322L3E|1|A|U|4cWW
2L3E|1|A|A|322L3E|1|A|U|5ns55
2L3E|1|A|C|112L3E|1|A|C|12
2L3E|1|A|C|112L3E|1|A|U|109BPh
2L3E|1|A|C|122L3E|1|A|C|11
2L3E|1|A|C|122L3E|1|A|C|12n0BP
2L3E|1|A|C|122L3E|1|A|C|13s35
2L3E|1|A|C|132L3E|1|A|C|12s538BPh
2L3E|1|A|C|132L3E|1|A|C|130BPh
2L3E|1|A|C|132L3E|1|A|C|14s35
2L3E|1|A|C|132L3E|1|A|G|27ncWW
2L3E|1|A|C|132L3E|1|A|G|28ncWW
2L3E|1|A|C|142L3E|1|A|C|13s53
2L3E|1|A|C|142L3E|1|A|C|140BPh
2L3E|1|A|C|142L3E|1|A|G|15s35
2L3E|1|A|C|142L3E|1|A|G|27cWW
2L3E|1|A|C|142L3E|1|A|G|28s55
2L3E|1|A|C|182L3E|1|A|C|180BPh
2L3E|1|A|C|182L3E|1|A|G|17s53
2L3E|1|A|C|182L3E|1|A|G|23cWW
2L3E|1|A|C|182L3E|1|A|U|19s35
2L3E|1|A|C|212L3E|1|A|C|21n0BP
2L3E|1|A|C|212L3E|1|A|G|22s53
2L3E|1|A|C|212L3E|1|A|U|19s53
2L3E|1|A|C|242L3E|1|A|A|25s35
2L3E|1|A|C|242L3E|1|A|C|240BPh
2L3E|1|A|C|242L3E|1|A|G|17cWW
2L3E|1|A|C|242L3E|1|A|G|23s53
2L3E|1|A|C|262L3E|1|A|A|25s53
2L3E|1|A|C|262L3E|1|A|C|260BPh
2L3E|1|A|C|262L3E|1|A|G|15cWW
2L3E|1|A|C|262L3E|1|A|G|27s35
2L3E|1|A|C|32L3E|1|A|C|30BPh
2L3E|1|A|C|32L3E|1|A|G|2s53
2L3E|1|A|C|32L3E|1|A|G|33cWW
2L3E|1|A|C|32L3E|1|A|U|4s35
2L3E|1|A|C|342L3E|1|A|C|340BPh
2L3E|1|A|C|342L3E|1|A|C|35s35
2L3E|1|A|C|342L3E|1|A|G|2cWW
2L3E|1|A|C|342L3E|1|A|G|33s53
2L3E|1|A|C|352L3E|1|A|C|34s53
2L3E|1|A|C|352L3E|1|A|C|350BPh
2L3E|1|A|C|352L3E|1|A|G|1cWW
2L3E|1|A|C|352L3E|1|A|G|2s55
2L3E|1|A|C|92L3E|1|A|G|8s53n9BP
2L3E|1|A|G|12L3E|1|A|C|35cWW
2L3E|1|A|G|12L3E|1|A|G|10BPh
2L3E|1|A|G|12L3E|1|A|G|2s35
2L3E|1|A|G|152L3E|1|A|C|14s53
2L3E|1|A|G|152L3E|1|A|C|26cWW
2L3E|1|A|G|152L3E|1|A|G|150BPh
2L3E|1|A|G|152L3E|1|A|G|27s55
2L3E|1|A|G|152L3E|1|A|U|16s35
2L3E|1|A|G|172L3E|1|A|A|25s55
2L3E|1|A|G|172L3E|1|A|C|18s35
2L3E|1|A|G|172L3E|1|A|C|24cWW
2L3E|1|A|G|172L3E|1|A|G|170BPh
2L3E|1|A|G|172L3E|1|A|U|16s53
2L3E|1|A|G|22L3E|1|A|C|3s35
2L3E|1|A|G|22L3E|1|A|C|34cWW
2L3E|1|A|G|22L3E|1|A|C|35s55
2L3E|1|A|G|22L3E|1|A|G|1s53
2L3E|1|A|G|22L3E|1|A|G|20BPh
2L3E|1|A|G|222L3E|1|A|C|21s35
2L3E|1|A|G|222L3E|1|A|G|23s55
2L3E|1|A|G|222L3E|1|A|U|19ntWS
2L3E|1|A|G|222L3E|1|A|U|20
2L3E|1|A|G|232L3E|1|A|C|18cWW
2L3E|1|A|G|232L3E|1|A|C|24s35
2L3E|1|A|G|232L3E|1|A|G|22s55
2L3E|1|A|G|232L3E|1|A|G|230BPh
2L3E|1|A|G|272L3E|1|A|C|13ncWW
2L3E|1|A|G|272L3E|1|A|C|14cWW
2L3E|1|A|G|272L3E|1|A|C|26s53
2L3E|1|A|G|272L3E|1|A|G|15s55
2L3E|1|A|G|272L3E|1|A|G|270BPh
2L3E|1|A|G|272L3E|1|A|G|28s35
2L3E|1|A|G|282L3E|1|A|C|13ncWW
2L3E|1|A|G|282L3E|1|A|C|14s55
2L3E|1|A|G|282L3E|1|A|G|27s53
2L3E|1|A|G|282L3E|1|A|G|28n0BP
2L3E|1|A|G|332L3E|1|A|A|32s53
2L3E|1|A|G|332L3E|1|A|C|3cWW
2L3E|1|A|G|332L3E|1|A|C|34s35
2L3E|1|A|G|332L3E|1|A|G|330BPh
2L3E|1|A|G|332L3E|1|A|U|4s55
2L3E|1|A|G|82L3E|1|A|A|29s55
2L3E|1|A|G|82L3E|1|A|C|9s35
2L3E|1|A|G|82L3E|1|A|G|80BPh
2L3E|1|A|G|82L3E|1|A|U|7s53
2L3E|1|A|U|102L3E|1|A|C|9
2L3E|1|A|U|102L3E|1|A|U|10n0BP
2L3E|1|A|U|162L3E|1|A|A|25cWW
2L3E|1|A|U|162L3E|1|A|G|15s53
2L3E|1|A|U|162L3E|1|A|G|17s35
2L3E|1|A|U|162L3E|1|A|U|160BPh
2L3E|1|A|U|192L3E|1|A|C|18s53n9BP
2L3E|1|A|U|192L3E|1|A|C|21s35
2L3E|1|A|U|192L3E|1|A|G|22ntSW
2L3E|1|A|U|192L3E|1|A|U|190BPh
2L3E|1|A|U|192L3E|1|A|U|20
2L3E|1|A|U|202L3E|1|A|G|22
2L3E|1|A|U|202L3E|1|A|U|19
2L3E|1|A|U|202L3E|1|A|U|200BPh
2L3E|1|A|U|42L3E|1|A|A|32cWW
2L3E|1|A|U|42L3E|1|A|C|3s53
2L3E|1|A|U|42L3E|1|A|G|33s55
2L3E|1|A|U|42L3E|1|A|U|40BPh
2L3E|1|A|U|42L3E|1|A|U|5s35
2L3E|1|A|U|52L3E|1|A|A|31cWW
2L3E|1|A|U|52L3E|1|A|A|32ns55
2L3E|1|A|U|52L3E|1|A|U|4s53
2L3E|1|A|U|52L3E|1|A|U|50BPh
2L3E|1|A|U|52L3E|1|A|U|6s35
2L3E|1|A|U|62L3E|1|A|A|30cWW
2L3E|1|A|U|62L3E|1|A|A|31ns55
2L3E|1|A|U|62L3E|1|A|U|5s53
2L3E|1|A|U|62L3E|1|A|U|6n0BP
2L3E|1|A|U|62L3E|1|A|U|7s35
2L3E|1|A|U|72L3E|1|A|A|29cWW
2L3E|1|A|U|72L3E|1|A|A|30s55
2L3E|1|A|U|72L3E|1|A|G|8s35
2L3E|1|A|U|72L3E|1|A|U|6s53
2L3E|1|A|U|72L3E|1|A|U|70BPh


Base-PairsCount (12)Relative Frequency
cWW121.000
Base-PhosphateCount (28)Relative Frequency
8BPh10.036
9BPh10.036
0BPh260.929
Base-StackingCount (18)Relative Frequency
s53100.556
s5580.444

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

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