A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
Search for released structures

NDB ID: 2LBJ  PDB ID: 2LBJ 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
2LBJ|1|A|A|112LBJ|1|A|A|110BPh
2LBJ|1|A|A|112LBJ|1|A|A|12s35
2LBJ|1|A|A|112LBJ|1|A|C|10ns55
2LBJ|1|A|A|112LBJ|1|A|U|6ncWW
2LBJ|1|A|A|122LBJ|1|A|A|11s53
2LBJ|1|A|A|122LBJ|1|A|A|120BPh
2LBJ|1|A|A|122LBJ|1|A|U|6cWW
2LBJ|1|A|C|102LBJ|1|A|A|11ns55
2LBJ|1|A|C|102LBJ|1|A|C|10n0BP
2LBJ|1|A|C|102LBJ|1|A|C|9ncHS
2LBJ|1|A|C|162LBJ|1|A|C|160BPh
2LBJ|1|A|C|162LBJ|1|A|C|17ns35
2LBJ|1|A|C|162LBJ|1|A|G|2cWW
2LBJ|1|A|C|162LBJ|1|A|U|15ns53
2LBJ|1|A|C|172LBJ|1|A|C|16ns53
2LBJ|1|A|C|172LBJ|1|A|C|170BPh
2LBJ|1|A|C|172LBJ|1|A|G|1cWW
2LBJ|1|A|C|42LBJ|1|A|C|40BPh
2LBJ|1|A|C|42LBJ|1|A|C|5s35
2LBJ|1|A|C|42LBJ|1|A|G|14cWW
2LBJ|1|A|C|42LBJ|1|A|G|3ns53
2LBJ|1|A|C|52LBJ|1|A|C|4s53
2LBJ|1|A|C|52LBJ|1|A|C|50BPh
2LBJ|1|A|C|52LBJ|1|A|G|13cWW
2LBJ|1|A|C|52LBJ|1|A|G|14ns55
2LBJ|1|A|C|92LBJ|1|A|C|10ncSH
2LBJ|1|A|C|92LBJ|1|A|C|90BPh
2LBJ|1|A|C|92LBJ|1|A|G|8s53
2LBJ|1|A|G|12LBJ|1|A|C|17cWW
2LBJ|1|A|G|12LBJ|1|A|G|10BPh
2LBJ|1|A|G|12LBJ|1|A|G|2ns35
2LBJ|1|A|G|132LBJ|1|A|A|12
2LBJ|1|A|G|132LBJ|1|A|C|5cWW
2LBJ|1|A|G|132LBJ|1|A|G|130BPh
2LBJ|1|A|G|132LBJ|1|A|G|14ns35
2LBJ|1|A|G|142LBJ|1|A|C|4cWW
2LBJ|1|A|G|142LBJ|1|A|C|5ns55
2LBJ|1|A|G|142LBJ|1|A|G|13ns53
2LBJ|1|A|G|142LBJ|1|A|G|140BPh
2LBJ|1|A|G|142LBJ|1|A|U|15s35
2LBJ|1|A|G|22LBJ|1|A|C|16cWW
2LBJ|1|A|G|22LBJ|1|A|G|1ns53
2LBJ|1|A|G|22LBJ|1|A|G|20BPh
2LBJ|1|A|G|22LBJ|1|A|G|3ns35
2LBJ|1|A|G|32LBJ|1|A|C|4ns35
2LBJ|1|A|G|32LBJ|1|A|G|2ns53
2LBJ|1|A|G|32LBJ|1|A|G|30BPh
2LBJ|1|A|G|32LBJ|1|A|U|15ncWW
2LBJ|1|A|G|82LBJ|1|A|A|11
2LBJ|1|A|G|82LBJ|1|A|C|10
2LBJ|1|A|G|82LBJ|1|A|C|9s35
2LBJ|1|A|G|82LBJ|1|A|G|8n0BP
2LBJ|1|A|G|82LBJ|1|A|U|7s53
2LBJ|1|A|U|152LBJ|1|A|C|16ns35
2LBJ|1|A|U|152LBJ|1|A|G|14s53
2LBJ|1|A|U|152LBJ|1|A|G|3ncWW
2LBJ|1|A|U|152LBJ|1|A|U|150BPh
2LBJ|1|A|U|62LBJ|1|A|A|11ncWW
2LBJ|1|A|U|62LBJ|1|A|A|12cWW
2LBJ|1|A|U|62LBJ|1|A|U|60BPh
2LBJ|1|A|U|62LBJ|1|A|U|7s35
2LBJ|1|A|U|72LBJ|1|A|G|8s35
2LBJ|1|A|U|72LBJ|1|A|U|6s53
2LBJ|1|A|U|72LBJ|1|A|U|70BPh


Base-PairsCount (5)Relative Frequency
cWW51.000
Base-PhosphateCount (15)Relative Frequency
0BPh151.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)